MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis strain D/13-96

Total Repeats: 36

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_022119	GAAGGA	2	12	759	770	50 %	0 %	50 %	0 %	Non-Coding
2	NC_022119	CAAAAA	2	12	6249	6260	83.33 %	0 %	0 %	16.67 %	Non-Coding
3	NC_022119	AAAATT	2	12	54064	54075	66.67 %	33.33 %	0 %	0 %	Non-Coding
4	NC_022119	AAAAAT	2	12	60872	60883	83.33 %	16.67 %	0 %	0 %	Non-Coding
5	NC_022119	ATCTAG	2	12	76601	76612	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
6	NC_022119	TTTTAG	2	12	115872	115883	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
7	NC_022119	TAAAAA	2	12	120468	120479	83.33 %	16.67 %	0 %	0 %	Non-Coding
8	NC_022119	AGAAAA	2	12	182084	182095	83.33 %	0 %	16.67 %	0 %	Non-Coding
9	NC_022119	TTTTAC	2	12	220863	220874	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
10	NC_022119	AACCCT	2	12	254576	254587	33.33 %	16.67 %	0 %	50 %	Non-Coding
11	NC_022119	ATTTTT	2	12	255380	255391	16.67 %	83.33 %	0 %	0 %	Non-Coding
12	NC_022119	AGGAGA	2	12	270479	270490	50 %	0 %	50 %	0 %	Non-Coding
13	NC_022119	ATATTA	2	12	279377	279388	50 %	50 %	0 %	0 %	Non-Coding
14	NC_022119	AAAAAG	2	12	323547	323558	83.33 %	0 %	16.67 %	0 %	Non-Coding
15	NC_022119	AGAATA	2	12	361051	361062	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
16	NC_022119	TTCTTA	2	12	361071	361082	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
17	NC_022119	TAACTA	2	12	502759	502770	50 %	33.33 %	0 %	16.67 %	Non-Coding
18	NC_022119	AAGAAA	2	12	502772	502783	83.33 %	0 %	16.67 %	0 %	Non-Coding
19	NC_022119	AGAATA	2	12	508747	508758	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
20	NC_022119	AACTAA	2	12	514484	514495	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
21	NC_022119	TCTCTA	2	12	516571	516582	16.67 %	50 %	0 %	33.33 %	Non-Coding
22	NC_022119	TCCCTC	2	12	548528	548539	0 %	33.33 %	0 %	66.67 %	Non-Coding
23	NC_022119	AAAAAT	2	12	566500	566511	83.33 %	16.67 %	0 %	0 %	Non-Coding
24	NC_022119	TAGGGG	2	12	605652	605663	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
25	NC_022119	TTATTT	2	12	648849	648860	16.67 %	83.33 %	0 %	0 %	Non-Coding
26	NC_022119	TATTTT	2	12	754795	754806	16.67 %	83.33 %	0 %	0 %	Non-Coding
27	NC_022119	TTTTCT	2	12	804685	804696	0 %	83.33 %	0 %	16.67 %	Non-Coding
28	NC_022119	ATTTTT	2	12	808464	808475	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_022119	ATTTTT	2	12	834943	834954	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_022119	TAAGGA	2	12	855907	855918	50 %	16.67 %	33.33 %	0 %	Non-Coding
31	NC_022119	CCGGAG	2	12	856825	856836	16.67 %	0 %	50 %	33.33 %	Non-Coding
32	NC_022119	TAAGGA	2	12	877955	877966	50 %	16.67 %	33.33 %	0 %	Non-Coding
33	NC_022119	CCGGAG	2	12	878873	878884	16.67 %	0 %	50 %	33.33 %	Non-Coding
34	NC_022119	GACGGC	2	12	921296	921307	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_022119	AAACAA	2	12	922984	922995	83.33 %	0 %	0 %	16.67 %	Non-Coding
36	NC_022119	TAAAAT	2	12	1042094	1042105	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.