MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis strain D/14-96 genome

Total Repeats: 37

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_022109	GAAGGA	2	12	759	770	50 %	0 %	50 %	0 %	Non-Coding
2	NC_022109	TATGGA	2	12	812	823	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
3	NC_022109	CAAAAA	2	12	6251	6262	83.33 %	0 %	0 %	16.67 %	Non-Coding
4	NC_022109	GAAAAG	2	12	56385	56396	66.67 %	0 %	33.33 %	0 %	Non-Coding
5	NC_022109	AGTTGT	2	12	57736	57747	16.67 %	50 %	33.33 %	0 %	Non-Coding
6	NC_022109	TTGTTC	2	12	58656	58667	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
7	NC_022109	AAAAAT	2	12	60959	60970	83.33 %	16.67 %	0 %	0 %	Non-Coding
8	NC_022109	ATCTAG	2	12	76686	76697	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
9	NC_022109	TTTTAG	2	12	115955	115966	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
10	NC_022109	TAAAAA	2	12	120549	120560	83.33 %	16.67 %	0 %	0 %	Non-Coding
11	NC_022109	AGAAAA	2	12	182171	182182	83.33 %	0 %	16.67 %	0 %	Non-Coding
12	NC_022109	TTTTAC	2	12	220991	221002	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
13	NC_022109	AACCCT	2	12	254707	254718	33.33 %	16.67 %	0 %	50 %	Non-Coding
14	NC_022109	ATATTA	2	12	279502	279513	50 %	50 %	0 %	0 %	Non-Coding
15	NC_022109	AGAATA	2	12	361130	361141	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
16	NC_022109	TTCTTA	2	12	361150	361161	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
17	NC_022109	TAACTA	2	12	502699	502710	50 %	33.33 %	0 %	16.67 %	Non-Coding
18	NC_022109	AAGAAA	2	12	502712	502723	83.33 %	0 %	16.67 %	0 %	Non-Coding
19	NC_022109	AGAATA	2	12	508687	508698	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
20	NC_022109	GGTTGT	2	12	510650	510661	0 %	50 %	50 %	0 %	Non-Coding
21	NC_022109	AACTAA	2	12	514420	514431	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
22	NC_022109	CTCTAT	2	12	516503	516514	16.67 %	50 %	0 %	33.33 %	Non-Coding
23	NC_022109	CTTTAG	2	12	524760	524771	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
24	NC_022109	AAAAAT	2	12	566399	566410	83.33 %	16.67 %	0 %	0 %	Non-Coding
25	NC_022109	TAGGGG	2	12	605565	605576	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
26	NC_022109	TCTTTT	2	12	617560	617571	0 %	83.33 %	0 %	16.67 %	Non-Coding
27	NC_022109	TTATTT	2	12	648765	648776	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_022109	GGGAAG	2	12	757726	757737	33.33 %	0 %	66.67 %	0 %	Non-Coding
29	NC_022109	GAGAAA	2	12	801049	801060	66.67 %	0 %	33.33 %	0 %	Non-Coding
30	NC_022109	TTTTCT	2	12	803507	803518	0 %	83.33 %	0 %	16.67 %	Non-Coding
31	NC_022109	TTTTTA	2	12	833721	833732	16.67 %	83.33 %	0 %	0 %	Non-Coding
32	NC_022109	TAAGGA	2	12	854683	854694	50 %	16.67 %	33.33 %	0 %	Non-Coding
33	NC_022109	CCGGAG	2	12	855601	855612	16.67 %	0 %	50 %	33.33 %	Non-Coding
34	NC_022109	TAAGGA	2	12	876728	876739	50 %	16.67 %	33.33 %	0 %	Non-Coding
35	NC_022109	CCGGAG	2	12	877646	877657	16.67 %	0 %	50 %	33.33 %	Non-Coding
36	NC_022109	ATTTTT	2	12	1037247	1037258	16.67 %	83.33 %	0 %	0 %	Non-Coding
37	NC_022109	TAAAAT	2	12	1040870	1040881	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.