MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis strain E/12-94 genome

Total Repeats: 36

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_022108	GAAGGA	2	12	760	771	50 %	0 %	50 %	0 %	Non-Coding
2	NC_022108	CAAAAA	2	12	6250	6261	83.33 %	0 %	0 %	16.67 %	Non-Coding
3	NC_022108	TAGCAT	2	12	48615	48626	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_022108	AAAAAT	2	12	60986	60997	83.33 %	16.67 %	0 %	0 %	Non-Coding
5	NC_022108	ATCTAG	2	12	76707	76718	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
6	NC_022108	TTTTAG	2	12	115982	115993	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
7	NC_022108	TAAAAA	2	12	120575	120586	83.33 %	16.67 %	0 %	0 %	Non-Coding
8	NC_022108	AGAAAA	2	12	182179	182190	83.33 %	0 %	16.67 %	0 %	Non-Coding
9	NC_022108	AAACAT	2	12	193020	193031	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
10	NC_022108	AACCCT	2	12	254936	254947	33.33 %	16.67 %	0 %	50 %	Non-Coding
11	NC_022108	CCTGCA	2	12	255892	255903	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
12	NC_022108	AGAATA	2	12	361384	361395	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
13	NC_022108	TTCTTA	2	12	361404	361415	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
14	NC_022108	TTCTTT	2	12	492609	492620	0 %	83.33 %	0 %	16.67 %	Non-Coding
15	NC_022108	TAACTA	2	12	503092	503103	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_022108	AAGAAA	2	12	503105	503116	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_022108	AACTAA	2	12	514818	514829	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
18	NC_022108	TCTCTA	2	12	516904	516915	16.67 %	50 %	0 %	33.33 %	Non-Coding
19	NC_022108	AAAGAA	2	12	541636	541647	83.33 %	0 %	16.67 %	0 %	Non-Coding
20	NC_022108	AAAAAT	2	12	566671	566682	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_022108	TAGGGG	2	12	605819	605830	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
22	NC_022108	TCTTTT	2	12	617803	617814	0 %	83.33 %	0 %	16.67 %	Non-Coding
23	NC_022108	TTAAAT	2	12	645970	645981	50 %	50 %	0 %	0 %	Non-Coding
24	NC_022108	TTATTT	2	12	649009	649020	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_022108	AGCTGG	2	12	687508	687519	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
26	NC_022108	CCGCAA	2	12	698550	698561	33.33 %	0 %	16.67 %	50 %	Non-Coding
27	NC_022108	TATCCA	2	12	721887	721898	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
28	NC_022108	GAGAGG	2	12	730513	730524	33.33 %	0 %	66.67 %	0 %	Non-Coding
29	NC_022108	GGGAAG	2	12	759026	759037	33.33 %	0 %	66.67 %	0 %	Non-Coding
30	NC_022108	ATTTTT	2	12	835067	835078	16.67 %	83.33 %	0 %	0 %	Non-Coding
31	NC_022108	TAAGGA	2	12	856030	856041	50 %	16.67 %	33.33 %	0 %	Non-Coding
32	NC_022108	CCGGAG	2	12	856948	856959	16.67 %	0 %	50 %	33.33 %	Non-Coding
33	NC_022108	TAAGGA	2	12	878080	878091	50 %	16.67 %	33.33 %	0 %	Non-Coding
34	NC_022108	CCGGAG	2	12	878998	879009	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_022108	CAATTT	2	12	906166	906177	33.33 %	50 %	0 %	16.67 %	Non-Coding
36	NC_022108	TAAAAT	2	12	1042200	1042211	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.