MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis strain F/2-93 genome

Total Repeats: 35

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_022106	GAAGGA	2	12	760	771	50 %	0 %	50 %	0 %	Non-Coding
2	NC_022106	CAAAAA	2	12	6250	6261	83.33 %	0 %	0 %	16.67 %	Non-Coding
3	NC_022106	AAAATT	2	12	54190	54201	66.67 %	33.33 %	0 %	0 %	Non-Coding
4	NC_022106	AAAAAT	2	12	61000	61011	83.33 %	16.67 %	0 %	0 %	Non-Coding
5	NC_022106	ATCTAG	2	12	76723	76734	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
6	NC_022106	TTTTAG	2	12	115996	116007	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
7	NC_022106	TAAAAA	2	12	120592	120603	83.33 %	16.67 %	0 %	0 %	Non-Coding
8	NC_022106	AGAAAA	2	12	182208	182219	83.33 %	0 %	16.67 %	0 %	Non-Coding
9	NC_022106	TATGAA	2	12	194980	194991	50 %	33.33 %	16.67 %	0 %	Non-Coding
10	NC_022106	TTTTAC	2	12	220955	220966	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
11	NC_022106	AACCCT	2	12	254668	254679	33.33 %	16.67 %	0 %	50 %	Non-Coding
12	NC_022106	ATTTTT	2	12	255472	255483	16.67 %	83.33 %	0 %	0 %	Non-Coding
13	NC_022106	AGGAGA	2	12	270571	270582	50 %	0 %	50 %	0 %	Non-Coding
14	NC_022106	ATATTA	2	12	279469	279480	50 %	50 %	0 %	0 %	Non-Coding
15	NC_022106	AAAAAG	2	12	323637	323648	83.33 %	0 %	16.67 %	0 %	Non-Coding
16	NC_022106	AGAATA	2	12	361141	361152	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
17	NC_022106	TAACTA	2	12	502856	502867	50 %	33.33 %	0 %	16.67 %	Non-Coding
18	NC_022106	AAGAAA	2	12	502869	502880	83.33 %	0 %	16.67 %	0 %	Non-Coding
19	NC_022106	AGAATA	2	12	508844	508855	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
20	NC_022106	AACTAA	2	12	514581	514592	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
21	NC_022106	TCCCTC	2	12	548467	548478	0 %	33.33 %	0 %	66.67 %	Non-Coding
22	NC_022106	AAAAAT	2	12	566439	566450	83.33 %	16.67 %	0 %	0 %	Non-Coding
23	NC_022106	TAGGGG	2	12	605592	605603	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
24	NC_022106	TTATTT	2	12	648789	648800	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_022106	TATTTT	2	12	754732	754743	16.67 %	83.33 %	0 %	0 %	Non-Coding
26	NC_022106	TTTTCT	2	12	804631	804642	0 %	83.33 %	0 %	16.67 %	Non-Coding
27	NC_022106	ATTTTT	2	12	808410	808421	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_022106	ATTTTT	2	12	834889	834900	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_022106	TAAGGA	2	12	855853	855864	50 %	16.67 %	33.33 %	0 %	Non-Coding
30	NC_022106	CCGGAG	2	12	856771	856782	16.67 %	0 %	50 %	33.33 %	Non-Coding
31	NC_022106	TAAGGA	2	12	877904	877915	50 %	16.67 %	33.33 %	0 %	Non-Coding
32	NC_022106	CCGGAG	2	12	878822	878833	16.67 %	0 %	50 %	33.33 %	Non-Coding
33	NC_022106	GACGGC	2	12	921246	921257	16.67 %	0 %	50 %	33.33 %	Non-Coding
34	NC_022106	AAACAA	2	12	922934	922945	83.33 %	0 %	0 %	16.67 %	Non-Coding
35	NC_022106	TAAAAT	2	12	1041969	1041980	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.