MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis RC-J(s)/122

Total Repeats: 47

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_021891	GAAGGA	2	12	760	771	50 %	0 %	50 %	0 %	Non-Coding
2	NC_021891	CAAAAA	2	12	6252	6263	83.33 %	0 %	0 %	16.67 %	Non-Coding
3	NC_021891	GAAAAG	2	12	56366	56377	66.67 %	0 %	33.33 %	0 %	Non-Coding
4	NC_021891	AGTTGT	2	12	57562	57573	16.67 %	50 %	33.33 %	0 %	Non-Coding
5	NC_021891	CTTGTT	2	12	58619	58630	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
6	NC_021891	AAAAAT	2	12	60925	60936	83.33 %	16.67 %	0 %	0 %	Non-Coding
7	NC_021891	ATCTAG	2	12	76636	76647	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
8	NC_021891	TTTTAG	2	12	115921	115932	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
9	NC_021891	TAAAAA	2	12	120517	120528	83.33 %	16.67 %	0 %	0 %	Non-Coding
10	NC_021891	TTGGTA	2	12	120565	120576	16.67 %	50 %	33.33 %	0 %	Non-Coding
11	NC_021891	AGGATC	2	12	120944	120955	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
12	NC_021891	AGAAAA	2	12	182544	182555	83.33 %	0 %	16.67 %	0 %	Non-Coding
13	NC_021891	GGATAT	2	12	192006	192017	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
14	NC_021891	GAATGC	2	12	193534	193545	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
15	NC_021891	TATGAA	2	12	198047	198058	50 %	33.33 %	16.67 %	0 %	Non-Coding
16	NC_021891	TTTTAC	2	12	224369	224380	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
17	NC_021891	TTTTTA	2	12	258901	258912	16.67 %	83.33 %	0 %	0 %	Non-Coding
18	NC_021891	AGGAGA	2	12	274001	274012	50 %	0 %	50 %	0 %	Non-Coding
19	NC_021891	ATATTA	2	12	282897	282908	50 %	50 %	0 %	0 %	Non-Coding
20	NC_021891	AAAAAG	2	12	327068	327079	83.33 %	0 %	16.67 %	0 %	Non-Coding
21	NC_021891	AGAATA	2	12	364540	364551	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
22	NC_021891	TTTTAA	2	12	412678	412689	33.33 %	66.67 %	0 %	0 %	Non-Coding
23	NC_021891	ACATCA	2	12	429982	429993	50 %	16.67 %	0 %	33.33 %	Non-Coding
24	NC_021891	TAACTA	2	12	506214	506225	50 %	33.33 %	0 %	16.67 %	Non-Coding
25	NC_021891	AAGAAA	2	12	506227	506238	83.33 %	0 %	16.67 %	0 %	Non-Coding
26	NC_021891	AGAATA	2	12	512202	512213	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
27	NC_021891	AACTAA	2	12	517934	517945	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
28	NC_021891	TCCCTC	2	12	551954	551965	0 %	33.33 %	0 %	66.67 %	Non-Coding
29	NC_021891	AAAAAT	2	12	569926	569937	83.33 %	16.67 %	0 %	0 %	Non-Coding
30	NC_021891	TAGGGG	2	12	609094	609105	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
31	NC_021891	TCTTTT	2	12	621088	621099	0 %	83.33 %	0 %	16.67 %	Non-Coding
32	NC_021891	TTATTT	2	12	652298	652309	16.67 %	83.33 %	0 %	0 %	Non-Coding
33	NC_021891	TATTTT	2	12	758243	758254	16.67 %	83.33 %	0 %	0 %	Non-Coding
34	NC_021891	GAGAAA	2	12	805708	805719	66.67 %	0 %	33.33 %	0 %	Non-Coding
35	NC_021891	TTTTCT	2	12	808166	808177	0 %	83.33 %	0 %	16.67 %	Non-Coding
36	NC_021891	ATTTTT	2	12	811945	811956	16.67 %	83.33 %	0 %	0 %	Non-Coding
37	NC_021891	TTTTTA	2	12	838383	838394	16.67 %	83.33 %	0 %	0 %	Non-Coding
38	NC_021891	TAAGGA	2	12	859346	859357	50 %	16.67 %	33.33 %	0 %	Non-Coding
39	NC_021891	CCGGAG	2	12	860264	860275	16.67 %	0 %	50 %	33.33 %	Non-Coding
40	NC_021891	CGGGGG	3	18	868425	868442	0 %	0 %	83.33 %	16.67 %	Non-Coding
41	NC_021891	GGGCGG	2	12	871192	871203	0 %	0 %	83.33 %	16.67 %	Non-Coding
42	NC_021891	TAAGGA	2	12	897119	897130	50 %	16.67 %	33.33 %	0 %	Non-Coding
43	NC_021891	CCGGAG	2	12	898037	898048	16.67 %	0 %	50 %	33.33 %	Non-Coding
44	NC_021891	GACGGC	2	12	940465	940476	16.67 %	0 %	50 %	33.33 %	Non-Coding
45	NC_021891	AAACAA	2	12	942153	942164	83.33 %	0 %	0 %	16.67 %	Non-Coding
46	NC_021891	AATTTT	2	12	1061201	1061212	33.33 %	66.67 %	0 %	0 %	Non-Coding
47	NC_021891	TAAAAT	2	12	1061213	1061224	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.