MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Lactobacillus plantarum 16 plasmid Lp16D

Total Repeats: 105

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_021526	AGG	2	6	544	549	33.33 %	0 %	66.67 %	0 %	Non-Coding
2	NC_021526	TGT	2	6	2396	2401	0 %	66.67 %	33.33 %	0 %	Non-Coding
3	NC_021526	TAA	2	6	3034	3039	66.67 %	33.33 %	0 %	0 %	Non-Coding
4	NC_021526	CGA	2	6	3118	3123	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
5	NC_021526	TCG	2	6	3133	3138	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
6	NC_021526	TAT	2	6	5060	5065	33.33 %	66.67 %	0 %	0 %	Non-Coding
7	NC_021526	AAG	2	6	5078	5083	66.67 %	0 %	33.33 %	0 %	Non-Coding
8	NC_021526	GTT	2	6	5745	5750	0 %	66.67 %	33.33 %	0 %	Non-Coding
9	NC_021526	GCG	2	6	5762	5767	0 %	0 %	66.67 %	33.33 %	Non-Coding
10	NC_021526	TCA	2	6	7798	7803	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
11	NC_021526	GAG	2	6	7895	7900	33.33 %	0 %	66.67 %	0 %	Non-Coding
12	NC_021526	TGC	2	6	7939	7944	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
13	NC_021526	CAG	2	6	7977	7982	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
14	NC_021526	ATT	2	6	9375	9380	33.33 %	66.67 %	0 %	0 %	Non-Coding
15	NC_021526	CTT	2	6	9436	9441	0 %	66.67 %	0 %	33.33 %	Non-Coding
16	NC_021526	TAT	2	6	9450	9455	33.33 %	66.67 %	0 %	0 %	Non-Coding
17	NC_021526	GTT	2	6	9576	9581	0 %	66.67 %	33.33 %	0 %	Non-Coding
18	NC_021526	GAC	2	6	12743	12748	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19	NC_021526	GTT	2	6	12756	12761	0 %	66.67 %	33.33 %	0 %	Non-Coding
20	NC_021526	AAT	2	6	12764	12769	66.67 %	33.33 %	0 %	0 %	Non-Coding
21	NC_021526	CAC	2	6	12770	12775	33.33 %	0 %	0 %	66.67 %	Non-Coding
22	NC_021526	AAG	2	6	12778	12783	66.67 %	0 %	33.33 %	0 %	Non-Coding
23	NC_021526	AGT	2	6	12923	12928	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
24	NC_021526	ATC	2	6	12946	12951	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
25	NC_021526	TGG	2	6	12973	12978	0 %	33.33 %	66.67 %	0 %	Non-Coding
26	NC_021526	AAT	2	6	12988	12993	66.67 %	33.33 %	0 %	0 %	Non-Coding
27	NC_021526	AGG	2	6	13055	13060	33.33 %	0 %	66.67 %	0 %	Non-Coding
28	NC_021526	TCT	2	6	13441	13446	0 %	66.67 %	0 %	33.33 %	Non-Coding
29	NC_021526	TTG	2	6	13459	13464	0 %	66.67 %	33.33 %	0 %	Non-Coding
30	NC_021526	TAT	2	6	13519	13524	33.33 %	66.67 %	0 %	0 %	Non-Coding
31	NC_021526	ATT	2	6	13537	13542	33.33 %	66.67 %	0 %	0 %	Non-Coding
32	NC_021526	TGT	2	6	13587	13592	0 %	66.67 %	33.33 %	0 %	Non-Coding
33	NC_021526	TAT	2	6	13805	13810	33.33 %	66.67 %	0 %	0 %	Non-Coding
34	NC_021526	ACT	2	6	13828	13833	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
35	NC_021526	AAT	2	6	13904	13909	66.67 %	33.33 %	0 %	0 %	Non-Coding
36	NC_021526	ATA	2	6	14466	14471	66.67 %	33.33 %	0 %	0 %	Non-Coding
37	NC_021526	ACG	2	6	14501	14506	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
38	NC_021526	GAT	2	6	16859	16864	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
39	NC_021526	ATT	2	6	17422	17427	33.33 %	66.67 %	0 %	0 %	Non-Coding
40	NC_021526	AAT	2	6	17441	17446	66.67 %	33.33 %	0 %	0 %	Non-Coding
41	NC_021526	ATT	2	6	18299	18304	33.33 %	66.67 %	0 %	0 %	Non-Coding
42	NC_021526	TCA	2	6	18470	18475	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
43	NC_021526	ATT	2	6	18506	18511	33.33 %	66.67 %	0 %	0 %	Non-Coding
44	NC_021526	GTT	2	6	18526	18531	0 %	66.67 %	33.33 %	0 %	Non-Coding
45	NC_021526	CAT	3	9	18547	18555	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
46	NC_021526	GAT	2	6	18643	18648	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
47	NC_021526	TAA	2	6	18659	18664	66.67 %	33.33 %	0 %	0 %	Non-Coding
48	NC_021526	TAT	2	6	18737	18742	33.33 %	66.67 %	0 %	0 %	Non-Coding
49	NC_021526	CGA	2	6	18874	18879	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
50	NC_021526	ACA	2	6	20211	20216	66.67 %	0 %	0 %	33.33 %	Non-Coding
51	NC_021526	CGC	2	6	20229	20234	0 %	0 %	33.33 %	66.67 %	Non-Coding
52	NC_021526	TAA	2	6	20238	20243	66.67 %	33.33 %	0 %	0 %	Non-Coding
53	NC_021526	AAC	2	6	20244	20249	66.67 %	0 %	0 %	33.33 %	Non-Coding
54	NC_021526	GAG	2	6	20268	20273	33.33 %	0 %	66.67 %	0 %	Non-Coding
55	NC_021526	TTA	2	6	24708	24713	33.33 %	66.67 %	0 %	0 %	Non-Coding
56	NC_021526	GGC	2	6	24743	24748	0 %	0 %	66.67 %	33.33 %	Non-Coding
57	NC_021526	GTA	2	6	24765	24770	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
58	NC_021526	AGC	2	6	24848	24853	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
59	NC_021526	TGG	2	6	24856	24861	0 %	33.33 %	66.67 %	0 %	Non-Coding
60	NC_021526	TGC	2	6	24881	24886	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
61	NC_021526	AGT	2	6	24941	24946	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
62	NC_021526	TGA	2	6	25093	25098	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
63	NC_021526	CAA	2	6	25108	25113	66.67 %	0 %	0 %	33.33 %	Non-Coding
64	NC_021526	CAA	2	6	25135	25140	66.67 %	0 %	0 %	33.33 %	Non-Coding
65	NC_021526	TGA	2	6	25246	25251	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
66	NC_021526	TGG	2	6	25283	25288	0 %	33.33 %	66.67 %	0 %	Non-Coding
67	NC_021526	AGT	2	6	25310	25315	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
68	NC_021526	TCA	2	6	25316	25321	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
69	NC_021526	TCA	2	6	25337	25342	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
70	NC_021526	TCT	3	9	25346	25354	0 %	66.67 %	0 %	33.33 %	Non-Coding
71	NC_021526	AAT	2	6	25578	25583	66.67 %	33.33 %	0 %	0 %	Non-Coding
72	NC_021526	CCT	2	6	26071	26076	0 %	33.33 %	0 %	66.67 %	Non-Coding
73	NC_021526	TAT	2	6	27461	27466	33.33 %	66.67 %	0 %	0 %	Non-Coding
74	NC_021526	TAA	2	6	27554	27559	66.67 %	33.33 %	0 %	0 %	Non-Coding
75	NC_021526	AAG	2	6	27630	27635	66.67 %	0 %	33.33 %	0 %	Non-Coding
76	NC_021526	CTT	2	6	27728	27733	0 %	66.67 %	0 %	33.33 %	Non-Coding
77	NC_021526	AAC	2	6	27803	27808	66.67 %	0 %	0 %	33.33 %	Non-Coding
78	NC_021526	TGA	2	6	27846	27851	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
79	NC_021526	GGT	2	6	27879	27884	0 %	33.33 %	66.67 %	0 %	Non-Coding
80	NC_021526	TAG	2	6	27912	27917	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
81	NC_021526	ACA	2	6	28064	28069	66.67 %	0 %	0 %	33.33 %	Non-Coding
82	NC_021526	CAG	2	6	28162	28167	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
83	NC_021526	TTA	2	6	28507	28512	33.33 %	66.67 %	0 %	0 %	Non-Coding
84	NC_021526	TAA	2	6	28513	28518	66.67 %	33.33 %	0 %	0 %	Non-Coding
85	NC_021526	CTT	2	6	29537	29542	0 %	66.67 %	0 %	33.33 %	Non-Coding
86	NC_021526	ATA	2	6	29601	29606	66.67 %	33.33 %	0 %	0 %	Non-Coding
87	NC_021526	TAA	2	6	29743	29748	66.67 %	33.33 %	0 %	0 %	Non-Coding
88	NC_021526	GTT	2	6	30088	30093	0 %	66.67 %	33.33 %	0 %	Non-Coding
89	NC_021526	ACA	2	6	30152	30157	66.67 %	0 %	0 %	33.33 %	Non-Coding
90	NC_021526	ATA	2	6	30188	30193	66.67 %	33.33 %	0 %	0 %	Non-Coding
91	NC_021526	ATA	2	6	30195	30200	66.67 %	33.33 %	0 %	0 %	Non-Coding
92	NC_021526	TAA	2	6	30280	30285	66.67 %	33.33 %	0 %	0 %	Non-Coding
93	NC_021526	ACT	2	6	30384	30389	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
94	NC_021526	ACC	2	6	31471	31476	33.33 %	0 %	0 %	66.67 %	Non-Coding
95	NC_021526	AAT	2	6	31717	31722	66.67 %	33.33 %	0 %	0 %	Non-Coding
96	NC_021526	CAG	2	6	31818	31823	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
97	NC_021526	TGA	2	6	31865	31870	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
98	NC_021526	ACA	2	6	31918	31923	66.67 %	0 %	0 %	33.33 %	Non-Coding
99	NC_021526	CTC	2	6	35534	35539	0 %	33.33 %	0 %	66.67 %	Non-Coding
100	NC_021526	CAG	2	6	35568	35573	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
101	NC_021526	ATT	2	6	35634	35639	33.33 %	66.67 %	0 %	0 %	Non-Coding
102	NC_021526	GTT	2	6	36673	36678	0 %	66.67 %	33.33 %	0 %	Non-Coding
103	NC_021526	GTA	2	6	36797	36802	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
104	NC_021526	GTC	2	6	37031	37036	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
105	NC_021526	GCA	2	6	37051	37056	33.33 %	0 %	33.33 %	33.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.