MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis L2b/LST high quality draft genome sequence

Total Repeats: 37

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020975	CAAAAA	2	12	6849	6860	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020975	AAAAAT	2	12	61528	61539	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020975	ATCTAG	2	12	77239	77250	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020975	TTTTAG	2	12	116521	116532	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020975	TAAAAA	2	12	121193	121204	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020975	AGAAAA	2	12	183396	183407	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020975	TATGAA	3	18	192333	192350	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020975	TTTTAC	2	12	217654	217665	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020975	TTTTTA	2	12	252186	252197	16.67 %	83.33 %	0 %	0 %	Non-Coding
10	NC_020975	AGGAGA	2	12	267286	267297	50 %	0 %	50 %	0 %	Non-Coding
11	NC_020975	ATATTA	2	12	276182	276193	50 %	50 %	0 %	0 %	Non-Coding
12	NC_020975	AAAAAG	2	12	320352	320363	83.33 %	0 %	16.67 %	0 %	Non-Coding
13	NC_020975	AGAATA	2	12	357832	357843	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
14	NC_020975	ACATCA	2	12	423294	423305	50 %	16.67 %	0 %	33.33 %	Non-Coding
15	NC_020975	TAACTA	2	12	499528	499539	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020975	AAGAAA	2	12	499541	499552	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020975	AGAATA	2	12	505516	505527	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020975	AACTAA	2	12	511248	511259	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020975	TCCCTC	2	12	545274	545285	0 %	33.33 %	0 %	66.67 %	Non-Coding
20	NC_020975	AAAAAT	2	12	563244	563255	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_020975	TAGGGG	2	12	602412	602423	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
22	NC_020975	TCTTTT	2	12	614406	614417	0 %	83.33 %	0 %	16.67 %	Non-Coding
23	NC_020975	TCTGCA	2	12	742053	742064	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
24	NC_020975	TATTTT	2	12	751530	751541	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_020975	GAGAAA	2	12	799000	799011	66.67 %	0 %	33.33 %	0 %	Non-Coding
26	NC_020975	TTTTCT	2	12	801458	801469	0 %	83.33 %	0 %	16.67 %	Non-Coding
27	NC_020975	ATTTTT	2	12	805237	805248	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_020975	TTTTTA	2	12	831717	831728	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020975	TAAGGA	2	12	852724	852735	50 %	16.67 %	33.33 %	0 %	Non-Coding
30	NC_020975	CCGGAG	2	12	853642	853653	16.67 %	0 %	50 %	33.33 %	Non-Coding
31	NC_020975	CCTCTA	2	12	866787	866798	16.67 %	33.33 %	0 %	50 %	Non-Coding
32	NC_020975	TAAGGA	2	12	874768	874779	50 %	16.67 %	33.33 %	0 %	Non-Coding
33	NC_020975	CCGGAG	2	12	875686	875697	16.67 %	0 %	50 %	33.33 %	Non-Coding
34	NC_020975	GACGGC	2	12	918105	918116	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_020975	AAACAA	2	12	919793	919804	83.33 %	0 %	0 %	16.67 %	Non-Coding
36	NC_020975	AATTTT	2	12	1038821	1038832	33.33 %	66.67 %	0 %	0 %	Non-Coding
37	NC_020975	TAAAAT	2	12	1038833	1038844	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.