MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis L1/224 complete genome

Total Repeats: 35

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020973	CAAAAA	2	12	6849	6860	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020973	AAAAAT	2	12	61384	61395	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020973	ATCTAG	2	12	77095	77106	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020973	TTTTAG	2	12	116376	116387	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020973	TAAAAA	2	12	121048	121059	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020973	AGAAAA	2	12	183200	183211	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020973	TATGAA	3	18	192135	192152	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020973	TTTTAC	2	12	217455	217466	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020973	TTTTTA	2	12	251987	251998	16.67 %	83.33 %	0 %	0 %	Non-Coding
10	NC_020973	AGGAGA	2	12	267087	267098	50 %	0 %	50 %	0 %	Non-Coding
11	NC_020973	ATATTA	2	12	275983	275994	50 %	50 %	0 %	0 %	Non-Coding
12	NC_020973	AAAAAG	2	12	320154	320165	83.33 %	0 %	16.67 %	0 %	Non-Coding
13	NC_020973	AGAATA	2	12	357635	357646	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
14	NC_020973	ACATCA	2	12	423097	423108	50 %	16.67 %	0 %	33.33 %	Non-Coding
15	NC_020973	TAACTA	2	12	499331	499342	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020973	AAGAAA	2	12	499344	499355	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020973	AGAATA	2	12	505319	505330	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020973	AACTAA	2	12	511052	511063	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020973	TCCCTC	2	12	545242	545253	0 %	33.33 %	0 %	66.67 %	Non-Coding
20	NC_020973	AAAAAT	2	12	563212	563223	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_020973	TAGGGG	2	12	602380	602391	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
22	NC_020973	TCTTTT	2	12	614374	614385	0 %	83.33 %	0 %	16.67 %	Non-Coding
23	NC_020973	TCTGCA	2	12	742023	742034	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
24	NC_020973	TATTTT	2	12	751500	751511	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_020973	GAGAAA	2	12	798978	798989	66.67 %	0 %	33.33 %	0 %	Non-Coding
26	NC_020973	TTTTCT	2	12	801436	801447	0 %	83.33 %	0 %	16.67 %	Non-Coding
27	NC_020973	ATTTTT	2	12	805215	805226	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_020973	TTTTTA	2	12	831695	831706	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020973	CCGGAG	2	12	853608	853619	16.67 %	0 %	50 %	33.33 %	Non-Coding
30	NC_020973	CCTCTA	2	12	866753	866764	16.67 %	33.33 %	0 %	50 %	Non-Coding
31	NC_020973	CCGGAG	2	12	875652	875663	16.67 %	0 %	50 %	33.33 %	Non-Coding
32	NC_020973	GACGGC	2	12	918071	918082	16.67 %	0 %	50 %	33.33 %	Non-Coding
33	NC_020973	AAACAA	2	12	919759	919770	83.33 %	0 %	0 %	16.67 %	Non-Coding
34	NC_020973	AATTTT	2	12	1038764	1038775	33.33 %	66.67 %	0 %	0 %	Non-Coding
35	NC_020973	TAAAAT	2	12	1038776	1038787	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.