MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis L1/1322/p2 high quality draft genome

Total Repeats: 36

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020972	CAAAAA	2	12	6849	6860	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020972	AAAAAT	2	12	61531	61542	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020972	ATCTAG	2	12	77242	77253	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020972	TTTTAG	2	12	116523	116534	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020972	TAAAAA	2	12	121195	121206	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020972	AGAAAA	2	12	183399	183410	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020972	TATGAA	3	18	192334	192351	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020972	TTTTAC	2	12	217654	217665	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020972	TTTTTA	2	12	252186	252197	16.67 %	83.33 %	0 %	0 %	Non-Coding
10	NC_020972	AGGAGA	2	12	267286	267297	50 %	0 %	50 %	0 %	Non-Coding
11	NC_020972	ATATTA	2	12	276182	276193	50 %	50 %	0 %	0 %	Non-Coding
12	NC_020972	AAAAAG	2	12	320353	320364	83.33 %	0 %	16.67 %	0 %	Non-Coding
13	NC_020972	AGAATA	2	12	357834	357845	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
14	NC_020972	TTTTAA	2	12	405994	406005	33.33 %	66.67 %	0 %	0 %	Non-Coding
15	NC_020972	ACATCA	2	12	423299	423310	50 %	16.67 %	0 %	33.33 %	Non-Coding
16	NC_020972	TAACTA	2	12	499532	499543	50 %	33.33 %	0 %	16.67 %	Non-Coding
17	NC_020972	AAGAAA	2	12	499545	499556	83.33 %	0 %	16.67 %	0 %	Non-Coding
18	NC_020972	AGAATA	2	12	505520	505531	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
19	NC_020972	AACTAA	2	12	511252	511263	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
20	NC_020972	TCCCTC	2	12	545858	545869	0 %	33.33 %	0 %	66.67 %	Non-Coding
21	NC_020972	AAAAAT	2	12	563828	563839	83.33 %	16.67 %	0 %	0 %	Non-Coding
22	NC_020972	TAGGGG	2	12	602996	603007	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
23	NC_020972	TCTTTT	2	12	614990	615001	0 %	83.33 %	0 %	16.67 %	Non-Coding
24	NC_020972	TCTGCA	2	12	742638	742649	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
25	NC_020972	TATTTT	2	12	752115	752126	16.67 %	83.33 %	0 %	0 %	Non-Coding
26	NC_020972	GAGAAA	2	12	799587	799598	66.67 %	0 %	33.33 %	0 %	Non-Coding
27	NC_020972	TTTTCT	2	12	802045	802056	0 %	83.33 %	0 %	16.67 %	Non-Coding
28	NC_020972	ATTTTT	2	12	805824	805835	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020972	TTTTTA	2	12	832304	832315	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_020972	CCGGAG	2	12	854218	854229	16.67 %	0 %	50 %	33.33 %	Non-Coding
31	NC_020972	CCTCTA	2	12	867363	867374	16.67 %	33.33 %	0 %	50 %	Non-Coding
32	NC_020972	CCGGAG	2	12	876262	876273	16.67 %	0 %	50 %	33.33 %	Non-Coding
33	NC_020972	GACGGC	2	12	918681	918692	16.67 %	0 %	50 %	33.33 %	Non-Coding
34	NC_020972	AAACAA	2	12	920369	920380	83.33 %	0 %	0 %	16.67 %	Non-Coding
35	NC_020972	AATTTT	2	12	1039373	1039384	33.33 %	66.67 %	0 %	0 %	Non-Coding
36	NC_020972	TAAAAT	2	12	1039385	1039396	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.