MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis D/SotonD6 high quality draft genome sequence

Total Repeats: 38

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020968	CAAAAA	2	12	6852	6863	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020968	AAAAAT	2	12	61567	61578	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020968	ATCTAG	2	12	77296	77307	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020968	TTTTAG	2	12	116447	116458	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020968	TAAAAA	2	12	121043	121054	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020968	AGAAAA	2	12	182666	182677	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020968	TATGAA	2	12	195479	195490	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020968	TTTTAC	2	12	221492	221503	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020968	AACCCT	2	12	255210	255221	33.33 %	16.67 %	0 %	50 %	Non-Coding
10	NC_020968	ATTTTT	2	12	256003	256014	16.67 %	83.33 %	0 %	0 %	Non-Coding
11	NC_020968	AGGAGA	2	12	271105	271116	50 %	0 %	50 %	0 %	Non-Coding
12	NC_020968	ATATTA	2	12	280003	280014	50 %	50 %	0 %	0 %	Non-Coding
13	NC_020968	AAAAAG	2	12	324161	324172	83.33 %	0 %	16.67 %	0 %	Non-Coding
14	NC_020968	AGAATA	2	12	361636	361647	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
15	NC_020968	TAACTA	2	12	503210	503221	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020968	AAGAAA	2	12	503223	503234	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020968	AGAATA	2	12	509198	509209	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020968	AACTAA	2	12	514930	514941	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020968	TCCCTC	2	12	548944	548955	0 %	33.33 %	0 %	66.67 %	Non-Coding
20	NC_020968	AAAAAT	2	12	566917	566928	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_020968	TAGGGG	2	12	606084	606095	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
22	NC_020968	TCTTTT	2	12	618079	618090	0 %	83.33 %	0 %	16.67 %	Non-Coding
23	NC_020968	TTATTT	2	12	649288	649299	16.67 %	83.33 %	0 %	0 %	Non-Coding
24	NC_020968	TCTGCA	2	12	745750	745761	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
25	NC_020968	TATTTT	2	12	755228	755239	16.67 %	83.33 %	0 %	0 %	Non-Coding
26	NC_020968	GAGAAA	2	12	802682	802693	66.67 %	0 %	33.33 %	0 %	Non-Coding
27	NC_020968	TTTTCT	2	12	805140	805151	0 %	83.33 %	0 %	16.67 %	Non-Coding
28	NC_020968	ATTTTT	2	12	808919	808930	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020968	TTTTTA	2	12	835356	835367	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_020968	TAAGGA	2	12	856319	856330	50 %	16.67 %	33.33 %	0 %	Non-Coding
31	NC_020968	CCGGAG	2	12	857237	857248	16.67 %	0 %	50 %	33.33 %	Non-Coding
32	NC_020968	CCTCTA	2	12	870382	870393	16.67 %	33.33 %	0 %	50 %	Non-Coding
33	NC_020968	TAAGGA	2	12	878364	878375	50 %	16.67 %	33.33 %	0 %	Non-Coding
34	NC_020968	CCGGAG	2	12	879282	879293	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_020968	GACGGC	2	12	921711	921722	16.67 %	0 %	50 %	33.33 %	Non-Coding
36	NC_020968	AAACAA	2	12	923399	923410	83.33 %	0 %	0 %	16.67 %	Non-Coding
37	NC_020968	ATTTTT	2	12	1038894	1038905	16.67 %	83.33 %	0 %	0 %	Non-Coding
38	NC_020968	TAAAAT	2	12	1042517	1042528	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.