MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis D/SotonD1 high quality draft genome sequence

Total Repeats: 37

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020967	CAAAAA	2	12	6850	6861	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020967	AAAATT	2	12	54681	54692	66.67 %	33.33 %	0 %	0 %	Non-Coding
3	NC_020967	AAAAAT	2	12	61491	61502	83.33 %	16.67 %	0 %	0 %	Non-Coding
4	NC_020967	ATCTAG	2	12	77220	77231	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
5	NC_020967	TTTTAG	2	12	116492	116503	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
6	NC_020967	TAAAAA	2	12	121088	121099	83.33 %	16.67 %	0 %	0 %	Non-Coding
7	NC_020967	AGAAAA	2	12	182704	182715	83.33 %	0 %	16.67 %	0 %	Non-Coding
8	NC_020967	TATGAA	2	12	195475	195486	50 %	33.33 %	16.67 %	0 %	Non-Coding
9	NC_020967	TTTTAC	2	12	221450	221461	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
10	NC_020967	AACCCT	2	12	255163	255174	33.33 %	16.67 %	0 %	50 %	Non-Coding
11	NC_020967	ATTTTT	2	12	255967	255978	16.67 %	83.33 %	0 %	0 %	Non-Coding
12	NC_020967	AGGAGA	2	12	271066	271077	50 %	0 %	50 %	0 %	Non-Coding
13	NC_020967	ATATTA	2	12	279964	279975	50 %	50 %	0 %	0 %	Non-Coding
14	NC_020967	AAAAAG	2	12	324132	324143	83.33 %	0 %	16.67 %	0 %	Non-Coding
15	NC_020967	AGAATA	2	12	361636	361647	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
16	NC_020967	TAACTA	2	12	503350	503361	50 %	33.33 %	0 %	16.67 %	Non-Coding
17	NC_020967	AAGAAA	2	12	503363	503374	83.33 %	0 %	16.67 %	0 %	Non-Coding
18	NC_020967	AGAATA	2	12	509338	509349	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
19	NC_020967	AACTAA	2	12	515075	515086	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
20	NC_020967	TCCCTC	2	12	548964	548975	0 %	33.33 %	0 %	66.67 %	Non-Coding
21	NC_020967	AAAAAT	2	12	566936	566947	83.33 %	16.67 %	0 %	0 %	Non-Coding
22	NC_020967	CAGCCG	2	12	597897	597908	16.67 %	0 %	33.33 %	50 %	Non-Coding
23	NC_020967	TAGGGG	2	12	606088	606099	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
24	NC_020967	TCTTTT	2	12	618073	618084	0 %	83.33 %	0 %	16.67 %	Non-Coding
25	NC_020967	TTATTT	2	12	649285	649296	16.67 %	83.33 %	0 %	0 %	Non-Coding
26	NC_020967	TATTTT	2	12	755231	755242	16.67 %	83.33 %	0 %	0 %	Non-Coding
27	NC_020967	TTTTCT	2	12	805121	805132	0 %	83.33 %	0 %	16.67 %	Non-Coding
28	NC_020967	ATTTTT	2	12	808900	808911	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020967	ATTTTT	2	12	835379	835390	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_020967	TAAGGA	2	12	856343	856354	50 %	16.67 %	33.33 %	0 %	Non-Coding
31	NC_020967	CCGGAG	2	12	857261	857272	16.67 %	0 %	50 %	33.33 %	Non-Coding
32	NC_020967	CCTCTA	2	12	870412	870423	16.67 %	33.33 %	0 %	50 %	Non-Coding
33	NC_020967	TAAGGA	2	12	878394	878405	50 %	16.67 %	33.33 %	0 %	Non-Coding
34	NC_020967	CCGGAG	2	12	879312	879323	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_020967	GACGGC	2	12	921736	921747	16.67 %	0 %	50 %	33.33 %	Non-Coding
36	NC_020967	AAACAA	2	12	923424	923435	83.33 %	0 %	0 %	16.67 %	Non-Coding
37	NC_020967	TAAAAT	2	12	1042542	1042553	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.