MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis K/SotonK1 complete genome

Total Repeats: 39

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020965	CAAAAA	2	12	6852	6863	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020965	AAAAAT	2	12	61459	61470	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020965	ATCTAG	2	12	77188	77199	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020965	TTTTAG	2	12	116459	116470	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020965	TAAAAA	2	12	121055	121066	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020965	AGAAAA	2	12	182675	182686	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020965	TATGAA	2	12	195488	195499	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020965	TTTTAC	2	12	221501	221512	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020965	AACCCT	2	12	255218	255229	33.33 %	16.67 %	0 %	50 %	Non-Coding
10	NC_020965	ATTTTT	2	12	256013	256024	16.67 %	83.33 %	0 %	0 %	Non-Coding
11	NC_020965	AGGAGA	2	12	271115	271126	50 %	0 %	50 %	0 %	Non-Coding
12	NC_020965	ATATTA	2	12	280013	280024	50 %	50 %	0 %	0 %	Non-Coding
13	NC_020965	AAAAAG	2	12	324173	324184	83.33 %	0 %	16.67 %	0 %	Non-Coding
14	NC_020965	AGAATA	2	12	361654	361665	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
15	NC_020965	TAACTA	2	12	503229	503240	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020965	AAGAAA	2	12	503242	503253	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020965	AGAATA	2	12	509217	509228	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020965	AACTAA	2	12	514950	514961	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020965	AGCCAC	2	12	531811	531822	33.33 %	0 %	16.67 %	50 %	Non-Coding
20	NC_020965	TCCCTC	2	12	548817	548828	0 %	33.33 %	0 %	66.67 %	Non-Coding
21	NC_020965	AAAAAT	2	12	566790	566801	83.33 %	16.67 %	0 %	0 %	Non-Coding
22	NC_020965	TAGGGG	2	12	605957	605968	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
23	NC_020965	TCTTTT	2	12	617952	617963	0 %	83.33 %	0 %	16.67 %	Non-Coding
24	NC_020965	TTATTT	2	12	649162	649173	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_020965	TCTGCA	2	12	745624	745635	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
26	NC_020965	TATTTT	2	12	755102	755113	16.67 %	83.33 %	0 %	0 %	Non-Coding
27	NC_020965	GAGAAA	2	12	802568	802579	66.67 %	0 %	33.33 %	0 %	Non-Coding
28	NC_020965	TTTTCT	2	12	805026	805037	0 %	83.33 %	0 %	16.67 %	Non-Coding
29	NC_020965	ATTTTT	2	12	808805	808816	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_020965	TTTTTA	2	12	835243	835254	16.67 %	83.33 %	0 %	0 %	Non-Coding
31	NC_020965	TAAGGA	2	12	856205	856216	50 %	16.67 %	33.33 %	0 %	Non-Coding
32	NC_020965	CCGGAG	2	12	857123	857134	16.67 %	0 %	50 %	33.33 %	Non-Coding
33	NC_020965	CCTCTA	2	12	870268	870279	16.67 %	33.33 %	0 %	50 %	Non-Coding
34	NC_020965	TAAGGA	2	12	878249	878260	50 %	16.67 %	33.33 %	0 %	Non-Coding
35	NC_020965	CCGGAG	2	12	879167	879178	16.67 %	0 %	50 %	33.33 %	Non-Coding
36	NC_020965	GACGGC	2	12	921598	921609	16.67 %	0 %	50 %	33.33 %	Non-Coding
37	NC_020965	AAACAA	2	12	923286	923297	83.33 %	0 %	0 %	16.67 %	Non-Coding
38	NC_020965	ATTTTT	2	12	1038781	1038792	16.67 %	83.33 %	0 %	0 %	Non-Coding
39	NC_020965	TAAAAT	2	12	1042404	1042415	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.