MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis E/SotonE8 high quality draft genome

Total Repeats: 38

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020942	CAAAAA	2	12	6852	6863	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020942	AAAATT	2	12	54668	54679	66.67 %	33.33 %	0 %	0 %	Non-Coding
3	NC_020942	AAAAAT	2	12	61478	61489	83.33 %	16.67 %	0 %	0 %	Non-Coding
4	NC_020942	ATCTAG	2	12	77201	77212	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
5	NC_020942	TTTTAG	2	12	116467	116478	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
6	NC_020942	TAAAAA	2	12	121063	121074	83.33 %	16.67 %	0 %	0 %	Non-Coding
7	NC_020942	AGAAAA	2	12	182681	182692	83.33 %	0 %	16.67 %	0 %	Non-Coding
8	NC_020942	TATGAA	2	12	201368	201379	50 %	33.33 %	16.67 %	0 %	Non-Coding
9	NC_020942	TTTTAC	2	12	227653	227664	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
10	NC_020942	AACCCT	2	12	261366	261377	33.33 %	16.67 %	0 %	50 %	Non-Coding
11	NC_020942	ATTTTT	2	12	262170	262181	16.67 %	83.33 %	0 %	0 %	Non-Coding
12	NC_020942	AGGAGA	2	12	277269	277280	50 %	0 %	50 %	0 %	Non-Coding
13	NC_020942	ATATTA	2	12	286167	286178	50 %	50 %	0 %	0 %	Non-Coding
14	NC_020942	AAAAAT	2	12	328519	328530	83.33 %	16.67 %	0 %	0 %	Non-Coding
15	NC_020942	AAAAAG	2	12	330337	330348	83.33 %	0 %	16.67 %	0 %	Non-Coding
16	NC_020942	AGAATA	2	12	367831	367842	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
17	NC_020942	TAACTA	2	12	509555	509566	50 %	33.33 %	0 %	16.67 %	Non-Coding
18	NC_020942	AAGAAA	2	12	509568	509579	83.33 %	0 %	16.67 %	0 %	Non-Coding
19	NC_020942	AGAATA	2	12	515546	515557	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
20	NC_020942	AACTAA	2	12	521282	521293	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
21	NC_020942	TCCCTC	2	12	555172	555183	0 %	33.33 %	0 %	66.67 %	Non-Coding
22	NC_020942	AAAAAT	2	12	573144	573155	83.33 %	16.67 %	0 %	0 %	Non-Coding
23	NC_020942	TAGGGG	2	12	612297	612308	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
24	NC_020942	TCTTTT	2	12	624282	624293	0 %	83.33 %	0 %	16.67 %	Non-Coding
25	NC_020942	TTATTT	2	12	655494	655505	16.67 %	83.33 %	0 %	0 %	Non-Coding
26	NC_020942	TATTTT	2	12	761440	761451	16.67 %	83.33 %	0 %	0 %	Non-Coding
27	NC_020942	TTTTCT	2	12	811356	811367	0 %	83.33 %	0 %	16.67 %	Non-Coding
28	NC_020942	ATTTTT	2	12	815135	815146	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020942	ATTTTT	2	12	841614	841625	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_020942	TAAGGA	2	12	862578	862589	50 %	16.67 %	33.33 %	0 %	Non-Coding
31	NC_020942	CCGGAG	2	12	863496	863507	16.67 %	0 %	50 %	33.33 %	Non-Coding
32	NC_020942	CCTCTA	2	12	876647	876658	16.67 %	33.33 %	0 %	50 %	Non-Coding
33	NC_020942	TAAGGA	2	12	884629	884640	50 %	16.67 %	33.33 %	0 %	Non-Coding
34	NC_020942	CCGGAG	2	12	885547	885558	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_020942	GACGGC	2	12	927971	927982	16.67 %	0 %	50 %	33.33 %	Non-Coding
36	NC_020942	AAACAA	2	12	929659	929670	83.33 %	0 %	0 %	16.67 %	Non-Coding
37	NC_020942	GCTATT	2	12	974530	974541	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
38	NC_020942	TAAAAT	2	12	1048769	1048780	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.