MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis A/5291 complete genome

Total Repeats: 39

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020939	CAAAAA	2	12	6846	6857	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020939	AAAAAT	2	12	61433	61444	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020939	ATCTAG	2	12	77156	77167	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020939	TTTTAG	2	12	116420	116431	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020939	TAAAAA	2	12	121017	121028	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020939	AGGATC	2	12	121444	121455	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
7	NC_020939	AGAAAA	2	12	183209	183220	83.33 %	0 %	16.67 %	0 %	Non-Coding
8	NC_020939	TATGAA	2	12	196979	196990	50 %	33.33 %	16.67 %	0 %	Non-Coding
9	NC_020939	TTTTAC	2	12	222988	222999	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
10	NC_020939	AACCCT	2	12	256701	256712	33.33 %	16.67 %	0 %	50 %	Non-Coding
11	NC_020939	TTTTTA	2	12	257497	257508	16.67 %	83.33 %	0 %	0 %	Non-Coding
12	NC_020939	AGGAGA	2	12	272598	272609	50 %	0 %	50 %	0 %	Non-Coding
13	NC_020939	ATATTA	2	12	281496	281507	50 %	50 %	0 %	0 %	Non-Coding
14	NC_020939	AAAAAG	2	12	325652	325663	83.33 %	0 %	16.67 %	0 %	Non-Coding
15	NC_020939	AGAATA	2	12	363127	363138	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
16	NC_020939	TAACTA	2	12	504846	504857	50 %	33.33 %	0 %	16.67 %	Non-Coding
17	NC_020939	AAGAAA	2	12	504859	504870	83.33 %	0 %	16.67 %	0 %	Non-Coding
18	NC_020939	AGAATA	2	12	510834	510845	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
19	NC_020939	AACTAA	2	12	516571	516582	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
20	NC_020939	TCCCTC	2	12	550587	550598	0 %	33.33 %	0 %	66.67 %	Non-Coding
21	NC_020939	AAAAAT	2	12	568560	568571	83.33 %	16.67 %	0 %	0 %	Non-Coding
22	NC_020939	TAGGGG	2	12	607723	607734	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
23	NC_020939	TCTTTT	2	12	619719	619730	0 %	83.33 %	0 %	16.67 %	Non-Coding
24	NC_020939	TTATTT	2	12	650930	650941	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_020939	TCTGCA	2	12	747404	747415	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
26	NC_020939	TATTTT	2	12	756882	756893	16.67 %	83.33 %	0 %	0 %	Non-Coding
27	NC_020939	GAGAAA	2	12	804333	804344	66.67 %	0 %	33.33 %	0 %	Non-Coding
28	NC_020939	TTTTCT	2	12	806791	806802	0 %	83.33 %	0 %	16.67 %	Non-Coding
29	NC_020939	ATTTTT	2	12	810570	810581	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_020939	TTTTTA	2	12	837008	837019	16.67 %	83.33 %	0 %	0 %	Non-Coding
31	NC_020939	TAAGGA	2	12	857971	857982	50 %	16.67 %	33.33 %	0 %	Non-Coding
32	NC_020939	CCGGAG	2	12	858889	858900	16.67 %	0 %	50 %	33.33 %	Non-Coding
33	NC_020939	CCTCTA	2	12	872035	872046	16.67 %	33.33 %	0 %	50 %	Non-Coding
34	NC_020939	TAAGGA	2	12	880018	880029	50 %	16.67 %	33.33 %	0 %	Non-Coding
35	NC_020939	CCGGAG	2	12	880936	880947	16.67 %	0 %	50 %	33.33 %	Non-Coding
36	NC_020939	GACGGC	2	12	923365	923376	16.67 %	0 %	50 %	33.33 %	Non-Coding
37	NC_020939	AAACAA	2	12	925053	925064	83.33 %	0 %	0 %	16.67 %	Non-Coding
38	NC_020939	ATTTTT	2	12	1040422	1040433	16.67 %	83.33 %	0 %	0 %	Non-Coding
39	NC_020939	TAAAAT	2	12	1043977	1043988	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.