MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis L1/440/LN complete genome

Total Repeats: 35

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020937	CAAAAA	2	12	6849	6860	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020937	AAAAAT	2	12	61522	61533	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020937	ATCTAG	2	12	77233	77244	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020937	TTTTAG	2	12	116514	116525	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020937	TAAAAA	2	12	121186	121197	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020937	AGAAAA	2	12	183388	183399	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020937	TATGAA	3	18	192324	192341	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020937	TTTTAC	2	12	217617	217628	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020937	TTTTTA	2	12	252149	252160	16.67 %	83.33 %	0 %	0 %	Non-Coding
10	NC_020937	AGGAGA	2	12	267249	267260	50 %	0 %	50 %	0 %	Non-Coding
11	NC_020937	ATATTA	2	12	276145	276156	50 %	50 %	0 %	0 %	Non-Coding
12	NC_020937	AAAAAG	2	12	320316	320327	83.33 %	0 %	16.67 %	0 %	Non-Coding
13	NC_020937	AGAATA	2	12	357796	357807	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
14	NC_020937	ACATCA	2	12	423258	423269	50 %	16.67 %	0 %	33.33 %	Non-Coding
15	NC_020937	TAACTA	2	12	499491	499502	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020937	AAGAAA	2	12	499504	499515	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020937	AGAATA	2	12	505479	505490	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020937	AACTAA	2	12	511211	511222	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020937	TCCCTC	2	12	545673	545684	0 %	33.33 %	0 %	66.67 %	Non-Coding
20	NC_020937	AAAAAT	2	12	563643	563654	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_020937	TAGGGG	2	12	602811	602822	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
22	NC_020937	TCTTTT	2	12	614805	614816	0 %	83.33 %	0 %	16.67 %	Non-Coding
23	NC_020937	TCTGCA	2	12	742454	742465	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
24	NC_020937	TATTTT	2	12	751931	751942	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_020937	GAGAAA	2	12	799409	799420	66.67 %	0 %	33.33 %	0 %	Non-Coding
26	NC_020937	TTTTCT	2	12	801867	801878	0 %	83.33 %	0 %	16.67 %	Non-Coding
27	NC_020937	ATTTTT	2	12	805646	805657	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_020937	TTTTTA	2	12	832126	832137	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020937	CCGGAG	2	12	854039	854050	16.67 %	0 %	50 %	33.33 %	Non-Coding
30	NC_020937	CCTCTA	2	12	867184	867195	16.67 %	33.33 %	0 %	50 %	Non-Coding
31	NC_020937	CCGGAG	2	12	876083	876094	16.67 %	0 %	50 %	33.33 %	Non-Coding
32	NC_020937	GACGGC	2	12	918502	918513	16.67 %	0 %	50 %	33.33 %	Non-Coding
33	NC_020937	AAACAA	2	12	920190	920201	83.33 %	0 %	0 %	16.67 %	Non-Coding
34	NC_020937	AATTTT	2	12	1039206	1039217	33.33 %	66.67 %	0 %	0 %	Non-Coding
35	NC_020937	TAAAAT	2	12	1039218	1039229	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.