MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis L2b/Canada1 high quality draft genome sequence

Total Repeats: 37

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020935	CAAAAA	2	12	6849	6860	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020935	AAAAAT	2	12	61529	61540	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020935	ATCTAG	2	12	77240	77251	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020935	TTTTAG	2	12	116522	116533	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020935	TAAAAA	2	12	121194	121205	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020935	AGAAAA	2	12	183339	183350	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020935	TATGAA	3	18	192275	192292	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020935	TTTTAC	2	12	217594	217605	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020935	TTTTTA	2	12	252125	252136	16.67 %	83.33 %	0 %	0 %	Non-Coding
10	NC_020935	AGGAGA	2	12	267225	267236	50 %	0 %	50 %	0 %	Non-Coding
11	NC_020935	ATATTA	2	12	276122	276133	50 %	50 %	0 %	0 %	Non-Coding
12	NC_020935	AAAAAG	2	12	320294	320305	83.33 %	0 %	16.67 %	0 %	Non-Coding
13	NC_020935	AGAATA	2	12	357719	357730	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
14	NC_020935	ACATCA	2	12	423181	423192	50 %	16.67 %	0 %	33.33 %	Non-Coding
15	NC_020935	TAACTA	2	12	499414	499425	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020935	AAGAAA	2	12	499427	499438	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020935	AGAATA	2	12	505402	505413	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020935	AACTAA	2	12	511131	511142	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020935	TCCCTC	2	12	545093	545104	0 %	33.33 %	0 %	66.67 %	Non-Coding
20	NC_020935	AAAAAT	2	12	563063	563074	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_020935	TAGGGG	2	12	602180	602191	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
22	NC_020935	TCTTTT	2	12	614174	614185	0 %	83.33 %	0 %	16.67 %	Non-Coding
23	NC_020935	TCTGCA	2	12	741791	741802	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
24	NC_020935	TATTTT	2	12	751268	751279	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_020935	GAGAAA	2	12	798738	798749	66.67 %	0 %	33.33 %	0 %	Non-Coding
26	NC_020935	TTTTCT	2	12	801196	801207	0 %	83.33 %	0 %	16.67 %	Non-Coding
27	NC_020935	ATTTTT	2	12	804975	804986	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_020935	TTTTTA	2	12	831455	831466	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020935	TAAGGA	2	12	852441	852452	50 %	16.67 %	33.33 %	0 %	Non-Coding
30	NC_020935	CCGGAG	2	12	853359	853370	16.67 %	0 %	50 %	33.33 %	Non-Coding
31	NC_020935	CCTCTA	2	12	866504	866515	16.67 %	33.33 %	0 %	50 %	Non-Coding
32	NC_020935	TAAGGA	2	12	874485	874496	50 %	16.67 %	33.33 %	0 %	Non-Coding
33	NC_020935	CCGGAG	2	12	875403	875414	16.67 %	0 %	50 %	33.33 %	Non-Coding
34	NC_020935	GACGGC	2	12	917822	917833	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_020935	AAACAA	2	12	919510	919521	83.33 %	0 %	0 %	16.67 %	Non-Coding
36	NC_020935	AATTTT	2	12	1038486	1038497	33.33 %	66.67 %	0 %	0 %	Non-Coding
37	NC_020935	TAAAAT	2	12	1038498	1038509	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.