MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Repeats of Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1

Total Repeats: 151

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020894	AGCTCA	2	12	1183	1194	33.33 %	16.67 %	16.67 %	33.33 %	474987155
2	NC_020894	CGGAGG	2	12	1402	1413	16.67 %	0 %	66.67 %	16.67 %	474987155
3	NC_020894	CGAGGA	2	12	2003	2014	33.33 %	0 %	50 %	16.67 %	474987155
4	NC_020894	TCACCC	2	12	2692	2703	16.67 %	16.67 %	0 %	66.67 %	474987155
5	NC_020894	GACGCC	2	12	4442	4453	16.67 %	0 %	33.33 %	50 %	474987159
6	NC_020894	GCCTTC	2	12	5228	5239	0 %	33.33 %	16.67 %	50 %	474987160
7	NC_020894	AGCGCG	2	12	5417	5428	16.67 %	0 %	50 %	33.33 %	474987160
8	NC_020894	CAGGAC	2	12	5515	5526	33.33 %	0 %	33.33 %	33.33 %	474987160
9	NC_020894	TCGATC	2	12	5720	5731	16.67 %	33.33 %	16.67 %	33.33 %	474987160
10	NC_020894	GGGGTG	2	12	6188	6199	0 %	16.67 %	83.33 %	0 %	474987160
11	NC_020894	GATGCT	2	12	8866	8877	16.67 %	33.33 %	33.33 %	16.67 %	474987163
12	NC_020894	GGCCGG	2	12	11390	11401	0 %	0 %	66.67 %	33.33 %	474987167
13	NC_020894	CGGGGC	2	12	11405	11416	0 %	0 %	66.67 %	33.33 %	474987167
14	NC_020894	TGACGC	2	12	12228	12239	16.67 %	16.67 %	33.33 %	33.33 %	474987169
15	NC_020894	CTACGC	2	12	13755	13766	16.67 %	16.67 %	16.67 %	50 %	474987169
16	NC_020894	CGCTCA	2	12	14156	14167	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
17	NC_020894	ACGCTC	2	12	15792	15803	16.67 %	16.67 %	16.67 %	50 %	474987172
18	NC_020894	GTCCAG	2	12	16519	16530	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
19	NC_020894	CGTCGG	2	12	21105	21116	0 %	16.67 %	50 %	33.33 %	Non-Coding
20	NC_020894	GTGATG	2	12	31049	31060	16.67 %	33.33 %	50 %	0 %	474987195
21	NC_020894	GGGCGC	2	12	31701	31712	0 %	0 %	66.67 %	33.33 %	Non-Coding
22	NC_020894	CGTCGA	2	12	32486	32497	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
23	NC_020894	AGGGGC	2	12	32648	32659	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
24	NC_020894	CGTCGA	2	12	33143	33154	16.67 %	16.67 %	33.33 %	33.33 %	474987198
25	NC_020894	CGACCA	2	12	34548	34559	33.33 %	0 %	16.67 %	50 %	Non-Coding
26	NC_020894	GTCGGC	2	12	34919	34930	0 %	16.67 %	50 %	33.33 %	474987201
27	NC_020894	GGCGTC	2	12	35911	35922	0 %	16.67 %	50 %	33.33 %	474987202
28	NC_020894	GCCGGT	2	12	39764	39775	0 %	16.67 %	50 %	33.33 %	474987206
29	NC_020894	CCCGCG	2	12	40515	40526	0 %	0 %	33.33 %	66.67 %	474987207
30	NC_020894	GCCGGT	2	12	40970	40981	0 %	16.67 %	50 %	33.33 %	Non-Coding
31	NC_020894	CGCTTT	2	12	42285	42296	0 %	50 %	16.67 %	33.33 %	474987209
32	NC_020894	GCCTTG	2	12	44609	44620	0 %	33.33 %	33.33 %	33.33 %	474987211
33	NC_020894	GCAGCC	2	12	47603	47614	16.67 %	0 %	33.33 %	50 %	474987214
34	NC_020894	GCACCG	2	12	48101	48112	16.67 %	0 %	33.33 %	50 %	474987214
35	NC_020894	CCGCCA	2	12	48878	48889	16.67 %	0 %	16.67 %	66.67 %	474987214
36	NC_020894	CCCGCG	2	12	50730	50741	0 %	0 %	33.33 %	66.67 %	Non-Coding
37	NC_020894	CCCGCG	2	12	50791	50802	0 %	0 %	33.33 %	66.67 %	Non-Coding
38	NC_020894	CCCGCG	2	12	50852	50863	0 %	0 %	33.33 %	66.67 %	Non-Coding
39	NC_020894	CCCGCG	2	12	50913	50924	0 %	0 %	33.33 %	66.67 %	Non-Coding
40	NC_020894	CCCGCG	2	12	50974	50985	0 %	0 %	33.33 %	66.67 %	Non-Coding
41	NC_020894	CCCGCG	2	12	51035	51046	0 %	0 %	33.33 %	66.67 %	Non-Coding
42	NC_020894	CCCGCG	2	12	51096	51107	0 %	0 %	33.33 %	66.67 %	Non-Coding
43	NC_020894	CCCGCG	2	12	51157	51168	0 %	0 %	33.33 %	66.67 %	Non-Coding
44	NC_020894	CCCGCG	2	12	51218	51229	0 %	0 %	33.33 %	66.67 %	Non-Coding
45	NC_020894	ACCTTG	2	12	51545	51556	16.67 %	33.33 %	16.67 %	33.33 %	474987215
46	NC_020894	CCCGCG	2	12	52463	52474	0 %	0 %	33.33 %	66.67 %	Non-Coding
47	NC_020894	CCCGCG	2	12	55691	55702	0 %	0 %	33.33 %	66.67 %	Non-Coding
48	NC_020894	CCCGCG	2	12	55976	55987	0 %	0 %	33.33 %	66.67 %	Non-Coding
49	NC_020894	CCCGCG	2	12	56037	56048	0 %	0 %	33.33 %	66.67 %	Non-Coding
50	NC_020894	CCCGCG	2	12	56098	56109	0 %	0 %	33.33 %	66.67 %	Non-Coding
51	NC_020894	CCCGCG	2	12	56159	56170	0 %	0 %	33.33 %	66.67 %	Non-Coding
52	NC_020894	CCCGCG	2	12	56220	56231	0 %	0 %	33.33 %	66.67 %	Non-Coding
53	NC_020894	CCCGCG	2	12	56281	56292	0 %	0 %	33.33 %	66.67 %	Non-Coding
54	NC_020894	CCCGCG	2	12	56341	56352	0 %	0 %	33.33 %	66.67 %	Non-Coding
55	NC_020894	CCCGCG	2	12	56402	56413	0 %	0 %	33.33 %	66.67 %	Non-Coding
56	NC_020894	CCCGCG	2	12	56463	56474	0 %	0 %	33.33 %	66.67 %	Non-Coding
57	NC_020894	CCCGCG	2	12	56524	56535	0 %	0 %	33.33 %	66.67 %	Non-Coding
58	NC_020894	CCCGCG	2	12	56585	56596	0 %	0 %	33.33 %	66.67 %	Non-Coding
59	NC_020894	CCCGCG	2	12	56646	56657	0 %	0 %	33.33 %	66.67 %	Non-Coding
60	NC_020894	CCCGCG	2	12	56707	56718	0 %	0 %	33.33 %	66.67 %	Non-Coding
61	NC_020894	CCCGCG	2	12	57053	57064	0 %	0 %	33.33 %	66.67 %	Non-Coding
62	NC_020894	CCCGCG	2	12	57114	57125	0 %	0 %	33.33 %	66.67 %	Non-Coding
63	NC_020894	CCCGCG	2	12	57175	57186	0 %	0 %	33.33 %	66.67 %	Non-Coding
64	NC_020894	CCCGCG	2	12	57236	57247	0 %	0 %	33.33 %	66.67 %	474987220
65	NC_020894	CCCGCG	2	12	57298	57309	0 %	0 %	33.33 %	66.67 %	474987220
66	NC_020894	CCCGCG	2	12	57359	57370	0 %	0 %	33.33 %	66.67 %	474987220
67	NC_020894	CCCGCG	2	12	57420	57431	0 %	0 %	33.33 %	66.67 %	474987220
68	NC_020894	CCCGCG	2	12	57542	57553	0 %	0 %	33.33 %	66.67 %	474987220
69	NC_020894	CCGAGC	2	12	58869	58880	16.67 %	0 %	33.33 %	50 %	Non-Coding
70	NC_020894	GCGCTC	2	12	59690	59701	0 %	16.67 %	33.33 %	50 %	474987221
71	NC_020894	AGGTGA	2	12	60543	60554	33.33 %	16.67 %	50 %	0 %	474987221
72	NC_020894	CAGCAC	2	12	61367	61378	33.33 %	0 %	16.67 %	50 %	474987221
73	NC_020894	AGGTCG	2	12	64856	64867	16.67 %	16.67 %	50 %	16.67 %	474987226
74	NC_020894	CCGCGC	2	12	67962	67973	0 %	0 %	33.33 %	66.67 %	474987229
75	NC_020894	GCGGCC	2	12	69632	69643	0 %	0 %	50 %	50 %	474987233
76	NC_020894	CCCGGC	2	12	70339	70350	0 %	0 %	33.33 %	66.67 %	474987236
77	NC_020894	GAGCCT	2	12	70366	70377	16.67 %	16.67 %	33.33 %	33.33 %	474987236
78	NC_020894	ACGCGG	2	12	70983	70994	16.67 %	0 %	50 %	33.33 %	474987236
79	NC_020894	GCCCGC	2	12	71324	71335	0 %	0 %	33.33 %	66.67 %	474987236
80	NC_020894	GCACGG	2	12	72150	72161	16.67 %	0 %	50 %	33.33 %	474987236
81	NC_020894	GGTCGC	2	12	75318	75329	0 %	16.67 %	50 %	33.33 %	474987239
82	NC_020894	GACGGC	2	12	78092	78103	16.67 %	0 %	50 %	33.33 %	474987241
83	NC_020894	CACCCC	2	12	78239	78250	16.67 %	0 %	0 %	83.33 %	Non-Coding
84	NC_020894	GGACCA	2	12	80296	80307	33.33 %	0 %	33.33 %	33.33 %	474987245
85	NC_020894	GTCGAC	2	12	80315	80326	16.67 %	16.67 %	33.33 %	33.33 %	474987245
86	NC_020894	CAAGCA	2	12	82471	82482	50 %	0 %	16.67 %	33.33 %	474987248
87	NC_020894	ACCGCC	2	12	84177	84188	16.67 %	0 %	16.67 %	66.67 %	474987248
88	NC_020894	CGAAGC	2	12	88785	88796	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
89	NC_020894	GCCCCG	2	12	95189	95200	0 %	0 %	33.33 %	66.67 %	474987261
90	NC_020894	CGGCCG	3	18	95742	95759	0 %	0 %	50 %	50 %	474987262
91	NC_020894	TGGCGG	2	12	96933	96944	0 %	16.67 %	66.67 %	16.67 %	474987264
92	NC_020894	GACCAG	2	12	98376	98387	33.33 %	0 %	33.33 %	33.33 %	474987268
93	NC_020894	GCTGCC	2	12	99812	99823	0 %	16.67 %	33.33 %	50 %	474987270
94	NC_020894	AAGGCC	2	12	101019	101030	33.33 %	0 %	33.33 %	33.33 %	474987273
95	NC_020894	CCCGCC	2	12	101118	101129	0 %	0 %	16.67 %	83.33 %	474987273
96	NC_020894	GACACA	2	12	101606	101617	50 %	0 %	16.67 %	33.33 %	474987274
97	NC_020894	GCATCC	2	12	101712	101723	16.67 %	16.67 %	16.67 %	50 %	474987274
98	NC_020894	ACCTGC	2	12	102376	102387	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
99	NC_020894	CTGCCC	2	12	102977	102988	0 %	16.67 %	16.67 %	66.67 %	474987275
100	NC_020894	CCTGCC	2	12	104062	104073	0 %	16.67 %	16.67 %	66.67 %	474987278
101	NC_020894	GGCGTT	2	12	108386	108397	0 %	33.33 %	50 %	16.67 %	474987283
102	NC_020894	TGTCGC	2	12	108751	108762	0 %	33.33 %	33.33 %	33.33 %	474987283
103	NC_020894	GCGCAG	2	12	108833	108844	16.67 %	0 %	50 %	33.33 %	474987283
104	NC_020894	GTAGGT	2	12	109004	109015	16.67 %	33.33 %	50 %	0 %	474987283
105	NC_020894	GCCGGT	2	12	109904	109915	0 %	16.67 %	50 %	33.33 %	474987283
106	NC_020894	AGTCGT	2	12	110926	110937	16.67 %	33.33 %	33.33 %	16.67 %	474987283
107	NC_020894	CCACTG	2	12	111499	111510	16.67 %	16.67 %	16.67 %	50 %	474987283
108	NC_020894	AGGAGA	2	12	111997	112008	50 %	0 %	50 %	0 %	474987283
109	NC_020894	GTAGTT	2	12	112733	112744	16.67 %	50 %	33.33 %	0 %	474987283
110	NC_020894	TCGGTG	2	12	113199	113210	0 %	33.33 %	50 %	16.67 %	474987283
111	NC_020894	TCACCC	2	12	113718	113729	16.67 %	16.67 %	0 %	66.67 %	474987283
112	NC_020894	GACGCC	2	12	114099	114110	16.67 %	0 %	33.33 %	50 %	474987283
113	NC_020894	CGGCGT	2	12	115392	115403	0 %	16.67 %	50 %	33.33 %	474987284
114	NC_020894	GGGTGA	2	12	115774	115785	16.67 %	16.67 %	66.67 %	0 %	474987284
115	NC_020894	CACCGA	2	12	116293	116304	33.33 %	0 %	16.67 %	50 %	474987284
116	NC_020894	AACTAC	2	12	116759	116770	50 %	16.67 %	0 %	33.33 %	474987284
117	NC_020894	TCTCCT	2	12	117495	117506	0 %	50 %	0 %	50 %	474987284
118	NC_020894	GCAGTG	2	12	117992	118003	16.67 %	16.67 %	50 %	16.67 %	474987284
119	NC_020894	TACGAC	2	12	118565	118576	33.33 %	16.67 %	16.67 %	33.33 %	474987284
120	NC_020894	CACCGG	2	12	119587	119598	16.67 %	0 %	33.33 %	50 %	474987284
121	NC_020894	CCTGCG	2	12	120658	120669	0 %	16.67 %	33.33 %	50 %	474987284
122	NC_020894	CGGCAG	2	12	120688	120699	16.67 %	0 %	50 %	33.33 %	474987284
123	NC_020894	CGACAG	2	12	120736	120747	33.33 %	0 %	33.33 %	33.33 %	474987284
124	NC_020894	CAACGC	2	12	121105	121116	33.33 %	0 %	16.67 %	50 %	474987284
125	NC_020894	GGCGTC	2	12	122097	122108	0 %	16.67 %	50 %	33.33 %	474987285
126	NC_020894	GCGGTC	2	12	125352	125363	0 %	16.67 %	50 %	33.33 %	Non-Coding
127	NC_020894	CAGTGG	2	12	125738	125749	16.67 %	16.67 %	50 %	16.67 %	474987289
128	NC_020894	CCCGCG	2	12	125750	125761	0 %	0 %	33.33 %	66.67 %	474987289
129	NC_020894	GCACCG	2	12	126516	126527	16.67 %	0 %	33.33 %	50 %	474987289
130	NC_020894	GCCAGC	2	12	127299	127310	16.67 %	0 %	33.33 %	50 %	Non-Coding
131	NC_020894	GAAGCC	2	12	128131	128142	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
132	NC_020894	GCCGTG	2	12	129314	129325	0 %	16.67 %	50 %	33.33 %	Non-Coding
133	NC_020894	TGGGCG	2	12	132904	132915	0 %	16.67 %	66.67 %	16.67 %	474987297
134	NC_020894	GGGAGT	2	12	133900	133911	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
135	NC_020894	CGAAGC	2	12	134915	134926	33.33 %	0 %	33.33 %	33.33 %	474987301
136	NC_020894	GCTTCT	2	12	135284	135295	0 %	50 %	16.67 %	33.33 %	474987301
137	NC_020894	CCGCTC	2	12	137431	137442	0 %	16.67 %	16.67 %	66.67 %	474987304
138	NC_020894	CCTGGG	2	12	140546	140557	0 %	16.67 %	50 %	33.33 %	474987309
139	NC_020894	GTGCCG	4	24	142492	142515	0 %	16.67 %	50 %	33.33 %	474987312
140	NC_020894	GCGACG	2	12	143664	143675	16.67 %	0 %	50 %	33.33 %	474987313
141	NC_020894	GTTCTT	2	12	146695	146706	0 %	66.67 %	16.67 %	16.67 %	474987318
142	NC_020894	GGTGAA	2	12	146932	146943	33.33 %	16.67 %	50 %	0 %	474987318
143	NC_020894	CACTCG	2	12	147272	147283	16.67 %	16.67 %	16.67 %	50 %	474987318
144	NC_020894	GGGCGC	2	12	148726	148737	0 %	0 %	66.67 %	33.33 %	474987320
145	NC_020894	CCGGAG	2	12	151515	151526	16.67 %	0 %	50 %	33.33 %	474987326
146	NC_020894	CACCGG	2	12	153673	153684	16.67 %	0 %	33.33 %	50 %	474987329
147	NC_020894	GCCCCG	2	12	154789	154800	0 %	0 %	33.33 %	66.67 %	474987331
148	NC_020894	CGGCCC	2	12	155592	155603	0 %	0 %	33.33 %	66.67 %	474987333
149	NC_020894	TCCTTG	2	12	161575	161586	0 %	50 %	16.67 %	33.33 %	474987338
150	NC_020894	TCGCCC	2	12	161653	161664	0 %	16.67 %	16.67 %	66.67 %	474987338
151	NC_020894	GGAGCG	2	12	164487	164498	16.67 %	0 %	66.67 %	16.67 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.