MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis IU888 complete genome

Total Repeats: 40

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020512	CAAAAA	2	12	6850	6861	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020512	TAGCAT	2	12	49222	49233	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
3	NC_020512	AAAAAT	2	12	61595	61606	83.33 %	16.67 %	0 %	0 %	Non-Coding
4	NC_020512	ATCTAG	2	12	77318	77329	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
5	NC_020512	TTTTAG	2	12	116596	116607	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
6	NC_020512	TAAAAA	2	12	121193	121204	83.33 %	16.67 %	0 %	0 %	Non-Coding
7	NC_020512	TTGGTA	2	12	121241	121252	16.67 %	50 %	33.33 %	0 %	Non-Coding
8	NC_020512	AGGATC	2	12	121620	121631	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
9	NC_020512	AGAAAA	2	12	182819	182830	83.33 %	0 %	16.67 %	0 %	Non-Coding
10	NC_020512	TATGAA	2	12	195592	195603	50 %	33.33 %	16.67 %	0 %	Non-Coding
11	NC_020512	TTTTAC	2	12	221877	221888	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
12	NC_020512	AACCCT	2	12	255594	255605	33.33 %	16.67 %	0 %	50 %	Non-Coding
13	NC_020512	ATTTTT	2	12	256389	256400	16.67 %	83.33 %	0 %	0 %	Non-Coding
14	NC_020512	AGGAGA	2	12	271488	271499	50 %	0 %	50 %	0 %	Non-Coding
15	NC_020512	ATATTA	2	12	280386	280397	50 %	50 %	0 %	0 %	Non-Coding
16	NC_020512	AAAAAT	2	12	322736	322747	83.33 %	16.67 %	0 %	0 %	Non-Coding
17	NC_020512	AAAAAG	2	12	324554	324565	83.33 %	0 %	16.67 %	0 %	Non-Coding
18	NC_020512	AGAATA	2	12	362048	362059	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
19	NC_020512	TTTTAA	2	12	410196	410207	33.33 %	66.67 %	0 %	0 %	Non-Coding
20	NC_020512	TAACTA	2	12	503773	503784	50 %	33.33 %	0 %	16.67 %	Non-Coding
21	NC_020512	AAGAAA	2	12	503786	503797	83.33 %	0 %	16.67 %	0 %	Non-Coding
22	NC_020512	AGAATA	2	12	509764	509775	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
23	NC_020512	AACTAA	2	12	515501	515512	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
24	NC_020512	TCCCTC	2	12	549391	549402	0 %	33.33 %	0 %	66.67 %	Non-Coding
25	NC_020512	AAAAAT	2	12	567363	567374	83.33 %	16.67 %	0 %	0 %	Non-Coding
26	NC_020512	TAGGGG	2	12	606516	606527	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
27	NC_020512	TCTTTT	2	12	618501	618512	0 %	83.33 %	0 %	16.67 %	Non-Coding
28	NC_020512	TTATTT	2	12	649713	649724	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020512	TATTTT	2	12	755662	755673	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_020512	TTTTCT	2	12	805577	805588	0 %	83.33 %	0 %	16.67 %	Non-Coding
31	NC_020512	ATTTTT	2	12	809356	809367	16.67 %	83.33 %	0 %	0 %	Non-Coding
32	NC_020512	ATTTTT	2	12	835835	835846	16.67 %	83.33 %	0 %	0 %	Non-Coding
33	NC_020512	TAAGGA	2	12	856787	856798	50 %	16.67 %	33.33 %	0 %	Non-Coding
34	NC_020512	CCGGAG	2	12	857705	857716	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_020512	CCTCTA	2	12	870856	870867	16.67 %	33.33 %	0 %	50 %	Non-Coding
36	NC_020512	TAAGGA	2	12	878838	878849	50 %	16.67 %	33.33 %	0 %	Non-Coding
37	NC_020512	CCGGAG	2	12	879756	879767	16.67 %	0 %	50 %	33.33 %	Non-Coding
38	NC_020512	AAACAA	2	12	923868	923879	83.33 %	0 %	0 %	16.67 %	Non-Coding
39	NC_020512	ATAGGG	2	12	946450	946461	33.33 %	16.67 %	50 %	0 %	Non-Coding
40	NC_020512	TAAAAT	2	12	1042979	1042990	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.