MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Lactobacillus casei W56 plasmid pW56

Total Repeats: 91

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020057	GCC	2	6	35	40	0 %	0 %	33.33 %	66.67 %	Non-Coding
2	NC_020057	CAG	2	6	52	57	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
3	NC_020057	TGA	2	6	102	107	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
4	NC_020057	CCT	2	6	421	426	0 %	33.33 %	0 %	66.67 %	Non-Coding
5	NC_020057	ACC	2	6	459	464	33.33 %	0 %	0 %	66.67 %	Non-Coding
6	NC_020057	TAA	2	6	506	511	66.67 %	33.33 %	0 %	0 %	Non-Coding
7	NC_020057	TAT	2	6	512	517	33.33 %	66.67 %	0 %	0 %	Non-Coding
8	NC_020057	GAG	2	6	618	623	33.33 %	0 %	66.67 %	0 %	Non-Coding
9	NC_020057	TAC	2	6	661	666	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
10	NC_020057	GTC	2	6	667	672	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
11	NC_020057	ACC	2	6	716	721	33.33 %	0 %	0 %	66.67 %	Non-Coding
12	NC_020057	CAA	2	6	5391	5396	66.67 %	0 %	0 %	33.33 %	Non-Coding
13	NC_020057	CCT	2	6	7547	7552	0 %	33.33 %	0 %	66.67 %	Non-Coding
14	NC_020057	TCC	2	6	8353	8358	0 %	33.33 %	0 %	66.67 %	Non-Coding
15	NC_020057	TTG	2	6	13331	13336	0 %	66.67 %	33.33 %	0 %	Non-Coding
16	NC_020057	GAT	2	6	13346	13351	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
17	NC_020057	CCT	2	6	14464	14469	0 %	33.33 %	0 %	66.67 %	Non-Coding
18	NC_020057	TGT	2	6	14682	14687	0 %	66.67 %	33.33 %	0 %	Non-Coding
19	NC_020057	TCC	2	6	14688	14693	0 %	33.33 %	0 %	66.67 %	Non-Coding
20	NC_020057	TCC	2	6	18619	18624	0 %	33.33 %	0 %	66.67 %	Non-Coding
21	NC_020057	ATT	2	6	19250	19255	33.33 %	66.67 %	0 %	0 %	Non-Coding
22	NC_020057	TGT	2	6	19313	19318	0 %	66.67 %	33.33 %	0 %	Non-Coding
23	NC_020057	TAA	2	6	19385	19390	66.67 %	33.33 %	0 %	0 %	Non-Coding
24	NC_020057	TCC	2	6	19763	19768	0 %	33.33 %	0 %	66.67 %	Non-Coding
25	NC_020057	AGT	2	6	20600	20605	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
26	NC_020057	AGA	2	6	23367	23372	66.67 %	0 %	33.33 %	0 %	Non-Coding
27	NC_020057	GTG	2	6	24235	24240	0 %	33.33 %	66.67 %	0 %	Non-Coding
28	NC_020057	GGC	2	6	24260	24265	0 %	0 %	66.67 %	33.33 %	Non-Coding
29	NC_020057	CGG	2	6	24270	24275	0 %	0 %	66.67 %	33.33 %	Non-Coding
30	NC_020057	GAT	2	6	24300	24305	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
31	NC_020057	ACG	2	6	24433	24438	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
32	NC_020057	GTT	2	6	24467	24472	0 %	66.67 %	33.33 %	0 %	Non-Coding
33	NC_020057	GTA	2	6	27237	27242	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
34	NC_020057	ACG	2	6	27284	27289	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
35	NC_020057	CTC	2	6	27383	27388	0 %	33.33 %	0 %	66.67 %	Non-Coding
36	NC_020057	CAG	2	6	27417	27422	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
37	NC_020057	ACC	2	6	32522	32527	33.33 %	0 %	0 %	66.67 %	Non-Coding
38	NC_020057	AAC	2	6	32547	32552	66.67 %	0 %	0 %	33.33 %	Non-Coding
39	NC_020057	CAT	2	6	32578	32583	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
40	NC_020057	CGG	2	6	32617	32622	0 %	0 %	66.67 %	33.33 %	Non-Coding
41	NC_020057	GCT	2	6	32634	32639	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
42	NC_020057	AAC	2	6	32831	32836	66.67 %	0 %	0 %	33.33 %	Non-Coding
43	NC_020057	TAT	2	6	32904	32909	33.33 %	66.67 %	0 %	0 %	Non-Coding
44	NC_020057	CAA	2	6	33145	33150	66.67 %	0 %	0 %	33.33 %	Non-Coding
45	NC_020057	CTA	2	6	33232	33237	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
46	NC_020057	ATG	2	6	33344	33349	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
47	NC_020057	TTG	2	6	33376	33381	0 %	66.67 %	33.33 %	0 %	Non-Coding
48	NC_020057	AAC	2	6	33388	33393	66.67 %	0 %	0 %	33.33 %	Non-Coding
49	NC_020057	TTA	2	6	34531	34536	33.33 %	66.67 %	0 %	0 %	Non-Coding
50	NC_020057	CTC	2	6	36379	36384	0 %	33.33 %	0 %	66.67 %	Non-Coding
51	NC_020057	CAG	2	6	36413	36418	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
52	NC_020057	TAA	2	6	37407	37412	66.67 %	33.33 %	0 %	0 %	Non-Coding
53	NC_020057	ATC	2	6	37603	37608	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
54	NC_020057	CCT	2	6	38212	38217	0 %	33.33 %	0 %	66.67 %	Non-Coding
55	NC_020057	AAG	2	6	38282	38287	66.67 %	0 %	33.33 %	0 %	Non-Coding
56	NC_020057	CGC	2	6	38746	38751	0 %	0 %	33.33 %	66.67 %	Non-Coding
57	NC_020057	GCT	2	6	38777	38782	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
58	NC_020057	CGT	2	6	39570	39575	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
59	NC_020057	TGG	2	6	39651	39656	0 %	33.33 %	66.67 %	0 %	Non-Coding
60	NC_020057	GTC	2	6	40178	40183	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
61	NC_020057	TAA	2	6	40203	40208	66.67 %	33.33 %	0 %	0 %	Non-Coding
62	NC_020057	ATA	2	6	45364	45369	66.67 %	33.33 %	0 %	0 %	Non-Coding
63	NC_020057	GAT	2	6	45409	45414	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
64	NC_020057	GTC	2	6	46704	46709	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
65	NC_020057	CTC	2	6	46773	46778	0 %	33.33 %	0 %	66.67 %	Non-Coding
66	NC_020057	CAG	2	6	46807	46812	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
67	NC_020057	CAA	2	6	46835	46840	66.67 %	0 %	0 %	33.33 %	Non-Coding
68	NC_020057	GAA	2	6	46894	46899	66.67 %	0 %	33.33 %	0 %	Non-Coding
69	NC_020057	TCC	2	6	47233	47238	0 %	33.33 %	0 %	66.67 %	Non-Coding
70	NC_020057	TGT	2	6	47306	47311	0 %	66.67 %	33.33 %	0 %	Non-Coding
71	NC_020057	TAA	2	6	47385	47390	66.67 %	33.33 %	0 %	0 %	Non-Coding
72	NC_020057	AGG	2	6	47406	47411	33.33 %	0 %	66.67 %	0 %	Non-Coding
73	NC_020057	TAT	2	6	47416	47421	33.33 %	66.67 %	0 %	0 %	Non-Coding
74	NC_020057	ATT	3	9	50956	50964	33.33 %	66.67 %	0 %	0 %	Non-Coding
75	NC_020057	GTT	2	6	51010	51015	0 %	66.67 %	33.33 %	0 %	Non-Coding
76	NC_020057	TAA	2	6	52896	52901	66.67 %	33.33 %	0 %	0 %	Non-Coding
77	NC_020057	AGC	2	6	53251	53256	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
78	NC_020057	CAG	2	6	53286	53291	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
79	NC_020057	TGC	2	6	53325	53330	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
80	NC_020057	GTT	2	6	53347	53352	0 %	66.67 %	33.33 %	0 %	Non-Coding
81	NC_020057	ATG	2	6	53606	53611	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
82	NC_020057	GCC	2	6	53768	53773	0 %	0 %	33.33 %	66.67 %	Non-Coding
83	NC_020057	TGC	2	6	53831	53836	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
84	NC_020057	GGT	2	6	53893	53898	0 %	33.33 %	66.67 %	0 %	Non-Coding
85	NC_020057	GTC	2	6	53916	53921	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
86	NC_020057	TTA	2	6	54018	54023	33.33 %	66.67 %	0 %	0 %	Non-Coding
87	NC_020057	CAT	2	6	54074	54079	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
88	NC_020057	AGT	2	6	54101	54106	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
89	NC_020057	AAG	2	6	55066	55071	66.67 %	0 %	33.33 %	0 %	Non-Coding
90	NC_020057	AGG	2	6	55081	55086	33.33 %	0 %	66.67 %	0 %	Non-Coding
91	NC_020057	AGG	2	6	55262	55267	33.33 %	0 %	66.67 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.