MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Bifidobacterium bifidum BGN4 chromosome

Total Repeats: 126

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017999	GCCTGC	2	12	21715	21726	0 %	16.67 %	33.33 %	50 %	Non-Coding
2	NC_017999	AGGCGA	2	12	40485	40496	33.33 %	0 %	50 %	16.67 %	Non-Coding
3	NC_017999	GCATAT	2	12	40746	40757	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_017999	TTACAT	2	12	56111	56122	33.33 %	50 %	0 %	16.67 %	Non-Coding
5	NC_017999	AGTTCA	2	12	85851	85862	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
6	NC_017999	GCGCAG	2	12	90677	90688	16.67 %	0 %	50 %	33.33 %	Non-Coding
7	NC_017999	CGGCTT	2	12	131730	131741	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
8	NC_017999	GGTTGG	2	12	137483	137494	0 %	33.33 %	66.67 %	0 %	Non-Coding
9	NC_017999	AGGTTG	2	12	137656	137667	16.67 %	33.33 %	50 %	0 %	Non-Coding
10	NC_017999	GTTGCC	2	12	138286	138297	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
11	NC_017999	GACCAT	2	12	138604	138615	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
12	NC_017999	TGCGGA	2	12	157745	157756	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
13	NC_017999	ACGGGT	2	12	170373	170384	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
14	NC_017999	ACCGCC	2	12	181675	181686	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
15	NC_017999	ATGGGC	2	12	195004	195015	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
16	NC_017999	GAGCCG	2	12	222503	222514	16.67 %	0 %	50 %	33.33 %	Non-Coding
17	NC_017999	AGGCGA	2	12	242541	242552	33.33 %	0 %	50 %	16.67 %	Non-Coding
18	NC_017999	GGCCGG	2	12	261548	261559	0 %	0 %	66.67 %	33.33 %	Non-Coding
19	NC_017999	AAATAG	2	12	305050	305061	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
20	NC_017999	TTTAAT	2	12	310575	310586	33.33 %	66.67 %	0 %	0 %	Non-Coding
21	NC_017999	CGGCTT	2	12	327700	327711	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
22	NC_017999	ATGAAC	2	12	329125	329136	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
23	NC_017999	CGCGTC	2	12	336053	336064	0 %	16.67 %	33.33 %	50 %	Non-Coding
24	NC_017999	ACATCA	2	12	340944	340955	50 %	16.67 %	0 %	33.33 %	Non-Coding
25	NC_017999	GCCCCG	2	12	361541	361552	0 %	0 %	33.33 %	66.67 %	Non-Coding
26	NC_017999	GCGTGC	2	12	388946	388957	0 %	16.67 %	50 %	33.33 %	Non-Coding
27	NC_017999	GTTTTT	2	12	392477	392488	0 %	83.33 %	16.67 %	0 %	Non-Coding
28	NC_017999	CCGACG	2	12	413659	413670	16.67 %	0 %	33.33 %	50 %	Non-Coding
29	NC_017999	GATGCG	2	12	452694	452705	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
30	NC_017999	CGGCGA	2	12	469034	469045	16.67 %	0 %	50 %	33.33 %	Non-Coding
31	NC_017999	AGAACA	2	12	470016	470027	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
32	NC_017999	CGGCAA	2	12	504652	504663	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
33	NC_017999	AACGTC	2	12	512081	512092	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
34	NC_017999	TGGCGA	2	12	575430	575441	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
35	NC_017999	TCCGGT	2	12	597235	597246	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
36	NC_017999	CGGTTC	2	12	597264	597275	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
37	NC_017999	CGGTTC	2	12	597285	597296	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
38	NC_017999	GGCGAA	2	12	620293	620304	33.33 %	0 %	50 %	16.67 %	Non-Coding
39	NC_017999	TGCGAA	2	12	625675	625686	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
40	NC_017999	CCGTGC	2	12	628386	628397	0 %	16.67 %	33.33 %	50 %	Non-Coding
41	NC_017999	GGCGCT	2	12	634024	634035	0 %	16.67 %	50 %	33.33 %	Non-Coding
42	NC_017999	CCGTGT	2	12	668714	668725	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
43	NC_017999	GCAAGC	2	12	685676	685687	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
44	NC_017999	GTATCG	2	12	739013	739024	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
45	NC_017999	AGCCCA	2	12	759619	759630	33.33 %	0 %	16.67 %	50 %	Non-Coding
46	NC_017999	AACCGG	2	12	766681	766692	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
47	NC_017999	GAGTGA	2	12	774292	774303	33.33 %	16.67 %	50 %	0 %	Non-Coding
48	NC_017999	GGCACA	2	12	808309	808320	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
49	NC_017999	TGTGAT	2	12	825970	825981	16.67 %	50 %	33.33 %	0 %	Non-Coding
50	NC_017999	CAAAAA	2	12	870831	870842	83.33 %	0 %	0 %	16.67 %	Non-Coding
51	NC_017999	ACAACC	2	12	930329	930340	50 %	0 %	0 %	50 %	Non-Coding
52	NC_017999	TTTTCC	2	12	930760	930771	0 %	66.67 %	0 %	33.33 %	Non-Coding
53	NC_017999	GATTGG	2	12	938293	938304	16.67 %	33.33 %	50 %	0 %	Non-Coding
54	NC_017999	ACGGCG	2	12	951696	951707	16.67 %	0 %	50 %	33.33 %	Non-Coding
55	NC_017999	CGATCT	2	12	951760	951771	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
56	NC_017999	TCGCCG	2	12	958279	958290	0 %	16.67 %	33.33 %	50 %	Non-Coding
57	NC_017999	GGGTGG	2	12	1010890	1010901	0 %	16.67 %	83.33 %	0 %	Non-Coding
58	NC_017999	CAGTGA	2	12	1019155	1019166	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
59	NC_017999	TTCCCG	2	12	1041031	1041042	0 %	33.33 %	16.67 %	50 %	Non-Coding
60	NC_017999	CACCGG	2	12	1041126	1041137	16.67 %	0 %	33.33 %	50 %	Non-Coding
61	NC_017999	CCGGCC	2	12	1043013	1043024	0 %	0 %	33.33 %	66.67 %	Non-Coding
62	NC_017999	CGAAGC	2	12	1043773	1043784	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
63	NC_017999	CAACAC	2	12	1044658	1044669	50 %	0 %	0 %	50 %	Non-Coding
64	NC_017999	CGAGCG	2	12	1084545	1084556	16.67 %	0 %	50 %	33.33 %	Non-Coding
65	NC_017999	CTGCCG	2	12	1130233	1130244	0 %	16.67 %	33.33 %	50 %	Non-Coding
66	NC_017999	CGCGGC	2	12	1229786	1229797	0 %	0 %	50 %	50 %	Non-Coding
67	NC_017999	AACGCA	2	12	1237083	1237094	50 %	0 %	16.67 %	33.33 %	Non-Coding
68	NC_017999	CCCGTT	2	12	1251674	1251685	0 %	33.33 %	16.67 %	50 %	Non-Coding
69	NC_017999	CCCGCG	2	12	1267097	1267108	0 %	0 %	33.33 %	66.67 %	Non-Coding
70	NC_017999	CTTGCA	2	12	1328272	1328283	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
71	NC_017999	CTTCGC	2	12	1328292	1328303	0 %	33.33 %	16.67 %	50 %	Non-Coding
72	NC_017999	CTGCGG	2	12	1337764	1337775	0 %	16.67 %	50 %	33.33 %	Non-Coding
73	NC_017999	CCGGGG	2	12	1356244	1356255	0 %	0 %	66.67 %	33.33 %	Non-Coding
74	NC_017999	GTCAGC	2	12	1421203	1421214	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
75	NC_017999	GGTTTT	2	12	1441175	1441186	0 %	66.67 %	33.33 %	0 %	Non-Coding
76	NC_017999	CCGGTT	2	12	1442714	1442725	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
77	NC_017999	GTTTTG	2	12	1445355	1445366	0 %	66.67 %	33.33 %	0 %	Non-Coding
78	NC_017999	CTGGCG	2	12	1458890	1458901	0 %	16.67 %	50 %	33.33 %	Non-Coding
79	NC_017999	GGCCGC	2	12	1481915	1481926	0 %	0 %	50 %	50 %	Non-Coding
80	NC_017999	ATATGC	2	12	1484993	1485004	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
81	NC_017999	TGGTCA	2	12	1492014	1492025	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
82	NC_017999	CAACGG	2	12	1502085	1502096	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
83	NC_017999	CATCAG	2	12	1510216	1510227	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
84	NC_017999	GCTTGC	2	12	1515959	1515970	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
85	NC_017999	GCCCAC	2	12	1519159	1519170	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
86	NC_017999	CCAATC	2	12	1540637	1540648	33.33 %	16.67 %	0 %	50 %	Non-Coding
87	NC_017999	CGATGA	2	12	1549999	1550010	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
88	NC_017999	CGCGCC	2	12	1581590	1581601	0 %	0 %	33.33 %	66.67 %	Non-Coding
89	NC_017999	CCGCGT	2	12	1585580	1585591	0 %	16.67 %	33.33 %	50 %	Non-Coding
90	NC_017999	CCCCGA	2	12	1590298	1590309	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
91	NC_017999	CGTCAC	2	12	1629260	1629271	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
92	NC_017999	CTCTTT	2	12	1635498	1635509	0 %	66.67 %	0 %	33.33 %	Non-Coding
93	NC_017999	CCGTCG	2	12	1639650	1639661	0 %	16.67 %	33.33 %	50 %	Non-Coding
94	NC_017999	GCCCGC	2	12	1641712	1641723	0 %	0 %	33.33 %	66.67 %	Non-Coding
95	NC_017999	ATCGGC	2	12	1641846	1641857	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
96	NC_017999	GCCGGC	2	12	1645524	1645535	0 %	0 %	50 %	50 %	Non-Coding
97	NC_017999	ATCAAT	2	12	1656734	1656745	50 %	33.33 %	0 %	16.67 %	Non-Coding
98	NC_017999	CGGCAT	2	12	1657071	1657082	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
99	NC_017999	CATTGC	2	12	1662617	1662628	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
100	NC_017999	GATCGC	2	12	1668459	1668470	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
101	NC_017999	ACAGCA	2	12	1668536	1668547	50 %	0 %	16.67 %	33.33 %	Non-Coding
102	NC_017999	AAAAAG	2	12	1675262	1675273	83.33 %	0 %	16.67 %	0 %	Non-Coding
103	NC_017999	CGAAAC	2	12	1678277	1678288	50 %	0 %	16.67 %	33.33 %	Non-Coding
104	NC_017999	CGGCCA	2	12	1680382	1680393	16.67 %	0 %	33.33 %	50 %	Non-Coding
105	NC_017999	GTGACG	2	12	1796701	1796712	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
106	NC_017999	CTCGCC	2	12	1832664	1832675	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
107	NC_017999	GCGGAT	2	12	1884328	1884339	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
108	NC_017999	TCGTTC	2	12	1952519	1952530	0 %	50 %	16.67 %	33.33 %	Non-Coding
109	NC_017999	TAGGCG	2	12	1974813	1974824	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
110	NC_017999	CCGGCC	2	12	2036279	2036290	0 %	0 %	33.33 %	66.67 %	Non-Coding
111	NC_017999	CCTTGC	2	12	2045024	2045035	0 %	33.33 %	16.67 %	50 %	Non-Coding
112	NC_017999	CGTCCA	2	12	2045178	2045189	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
113	NC_017999	AAGAAA	2	12	2067169	2067180	83.33 %	0 %	16.67 %	0 %	Non-Coding
114	NC_017999	CGTCAA	2	12	2091420	2091431	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
115	NC_017999	TCGGCA	2	12	2092669	2092680	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
116	NC_017999	GCAACG	2	12	2094672	2094683	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
117	NC_017999	ATGCCG	2	12	2108075	2108086	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
118	NC_017999	CATTTC	2	12	2119579	2119590	16.67 %	50 %	0 %	33.33 %	Non-Coding
119	NC_017999	TATGGT	2	12	2129128	2129139	16.67 %	50 %	33.33 %	0 %	Non-Coding
120	NC_017999	TCGAAA	2	12	2133956	2133967	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
121	NC_017999	TTTTCA	2	12	2149867	2149878	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
122	NC_017999	CGCGCC	2	12	2155882	2155893	0 %	0 %	33.33 %	66.67 %	Non-Coding
123	NC_017999	CGCGCC	2	12	2163002	2163013	0 %	0 %	33.33 %	66.67 %	Non-Coding
124	NC_017999	ATGCCG	2	12	2170080	2170091	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
125	NC_017999	CTCCCC	2	12	2196614	2196625	0 %	16.67 %	0 %	83.33 %	Non-Coding
126	NC_017999	CATCCC	2	12	2200660	2200671	16.67 %	16.67 %	0 %	66.67 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.