MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis F/SW5

Total Repeats: 40

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017953	CAAAAA	2	12	6850	6861	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_017953	AAAATT	2	12	54681	54692	66.67 %	33.33 %	0 %	0 %	Non-Coding
3	NC_017953	AAAAAT	2	12	61491	61502	83.33 %	16.67 %	0 %	0 %	Non-Coding
4	NC_017953	ATCTAG	2	12	77214	77225	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
5	NC_017953	AGCTGT	2	12	96508	96519	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
6	NC_017953	TTTTAG	2	12	116493	116504	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
7	NC_017953	TAAAAA	2	12	121089	121100	83.33 %	16.67 %	0 %	0 %	Non-Coding
8	NC_017953	AGAAAA	2	12	182705	182716	83.33 %	0 %	16.67 %	0 %	Non-Coding
9	NC_017953	TATGAA	2	12	195477	195488	50 %	33.33 %	16.67 %	0 %	Non-Coding
10	NC_017953	TTGCCT	2	12	196595	196606	0 %	50 %	16.67 %	33.33 %	Non-Coding
11	NC_017953	TTTTAC	2	12	221452	221463	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
12	NC_017953	AACCCT	2	12	255165	255176	33.33 %	16.67 %	0 %	50 %	Non-Coding
13	NC_017953	ATTTTT	2	12	255969	255980	16.67 %	83.33 %	0 %	0 %	Non-Coding
14	NC_017953	AGGAGA	2	12	271068	271079	50 %	0 %	50 %	0 %	Non-Coding
15	NC_017953	ATATTA	2	12	279966	279977	50 %	50 %	0 %	0 %	Non-Coding
16	NC_017953	AAAAAT	2	12	322318	322329	83.33 %	16.67 %	0 %	0 %	Non-Coding
17	NC_017953	AAAAAG	2	12	324136	324147	83.33 %	0 %	16.67 %	0 %	Non-Coding
18	NC_017953	AGAATA	2	12	361640	361651	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
19	NC_017953	TTTTAA	2	12	409786	409797	33.33 %	66.67 %	0 %	0 %	Non-Coding
20	NC_017953	TAACTA	2	12	503354	503365	50 %	33.33 %	0 %	16.67 %	Non-Coding
21	NC_017953	AAGAAA	2	12	503367	503378	83.33 %	0 %	16.67 %	0 %	Non-Coding
22	NC_017953	AGAATA	2	12	509342	509353	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
23	NC_017953	AACTAA	2	12	515079	515090	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
24	NC_017953	TCCCTC	2	12	549122	549133	0 %	33.33 %	0 %	66.67 %	Non-Coding
25	NC_017953	AAAAAT	2	12	567094	567105	83.33 %	16.67 %	0 %	0 %	Non-Coding
26	NC_017953	TAGGGG	2	12	606246	606257	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
27	NC_017953	TCTTTT	2	12	618231	618242	0 %	83.33 %	0 %	16.67 %	Non-Coding
28	NC_017953	TTATTT	2	12	649443	649454	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_017953	TATTTT	2	12	755389	755400	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_017953	TTTTCT	2	12	805288	805299	0 %	83.33 %	0 %	16.67 %	Non-Coding
31	NC_017953	ATTTTT	2	12	809067	809078	16.67 %	83.33 %	0 %	0 %	Non-Coding
32	NC_017953	ATTTTT	2	12	835546	835557	16.67 %	83.33 %	0 %	0 %	Non-Coding
33	NC_017953	TAAGGA	2	12	856510	856521	50 %	16.67 %	33.33 %	0 %	Non-Coding
34	NC_017953	CCGGAG	2	12	857428	857439	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_017953	CCTCTA	2	12	870579	870590	16.67 %	33.33 %	0 %	50 %	Non-Coding
36	NC_017953	TAAGGA	2	12	878561	878572	50 %	16.67 %	33.33 %	0 %	Non-Coding
37	NC_017953	CCGGAG	2	12	879479	879490	16.67 %	0 %	50 %	33.33 %	Non-Coding
38	NC_017953	AAACAA	2	12	923591	923602	83.33 %	0 %	0 %	16.67 %	Non-Coding
39	NC_017953	ATAGGG	2	12	946173	946184	33.33 %	16.67 %	50 %	0 %	Non-Coding
40	NC_017953	TAAAAT	2	12	1042700	1042711	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.