MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis F/SW4

Total Repeats: 40

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017951	CAAAAA	2	12	6850	6861	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_017951	AAAATT	2	12	54682	54693	66.67 %	33.33 %	0 %	0 %	Non-Coding
3	NC_017951	AAAAAT	2	12	61492	61503	83.33 %	16.67 %	0 %	0 %	Non-Coding
4	NC_017951	ATCTAG	2	12	77215	77226	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
5	NC_017951	TTTTAG	2	12	116487	116498	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
6	NC_017951	TAAAAA	2	12	121083	121094	83.33 %	16.67 %	0 %	0 %	Non-Coding
7	NC_017951	AGAAAA	2	12	182701	182712	83.33 %	0 %	16.67 %	0 %	Non-Coding
8	NC_017951	TATGAA	2	12	195473	195484	50 %	33.33 %	16.67 %	0 %	Non-Coding
9	NC_017951	TTGCCT	2	12	196591	196602	0 %	50 %	16.67 %	33.33 %	Non-Coding
10	NC_017951	TTTTAC	2	12	221448	221459	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
11	NC_017951	AACCCT	2	12	255161	255172	33.33 %	16.67 %	0 %	50 %	Non-Coding
12	NC_017951	ATTTTT	2	12	255965	255976	16.67 %	83.33 %	0 %	0 %	Non-Coding
13	NC_017951	AGGAGA	2	12	271064	271075	50 %	0 %	50 %	0 %	Non-Coding
14	NC_017951	ATATTA	2	12	279962	279973	50 %	50 %	0 %	0 %	Non-Coding
15	NC_017951	AAAAAT	2	12	322312	322323	83.33 %	16.67 %	0 %	0 %	Non-Coding
16	NC_017951	AAAAAG	2	12	324130	324141	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_017951	AGAATA	2	12	361634	361645	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_017951	TTTTAA	2	12	409780	409791	33.33 %	66.67 %	0 %	0 %	Non-Coding
19	NC_017951	TAACTA	2	12	503348	503359	50 %	33.33 %	0 %	16.67 %	Non-Coding
20	NC_017951	AAGAAA	2	12	503361	503372	83.33 %	0 %	16.67 %	0 %	Non-Coding
21	NC_017951	AGAATA	2	12	509336	509347	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
22	NC_017951	AACTAA	2	12	515073	515084	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
23	NC_017951	TCCCTC	2	12	549119	549130	0 %	33.33 %	0 %	66.67 %	Non-Coding
24	NC_017951	AAAAAT	2	12	567091	567102	83.33 %	16.67 %	0 %	0 %	Non-Coding
25	NC_017951	TAGGGG	2	12	606245	606256	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
26	NC_017951	TCTTTT	2	12	618230	618241	0 %	83.33 %	0 %	16.67 %	Non-Coding
27	NC_017951	TTATTT	2	12	649442	649453	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_017951	TATTTT	2	12	755391	755402	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_017951	TTTTCT	2	12	805290	805301	0 %	83.33 %	0 %	16.67 %	Non-Coding
30	NC_017951	ATTTTT	2	12	809069	809080	16.67 %	83.33 %	0 %	0 %	Non-Coding
31	NC_017951	ATTTTT	2	12	835548	835559	16.67 %	83.33 %	0 %	0 %	Non-Coding
32	NC_017951	TAAGGA	2	12	856512	856523	50 %	16.67 %	33.33 %	0 %	Non-Coding
33	NC_017951	CCGGAG	2	12	857430	857441	16.67 %	0 %	50 %	33.33 %	Non-Coding
34	NC_017951	CCTCTA	2	12	870581	870592	16.67 %	33.33 %	0 %	50 %	Non-Coding
35	NC_017951	TAAGGA	2	12	878563	878574	50 %	16.67 %	33.33 %	0 %	Non-Coding
36	NC_017951	CCGGAG	2	12	879481	879492	16.67 %	0 %	50 %	33.33 %	Non-Coding
37	NC_017951	AAACAA	2	12	923593	923604	83.33 %	0 %	0 %	16.67 %	Non-Coding
38	NC_017951	ATAGGG	2	12	946178	946189	33.33 %	16.67 %	50 %	0 %	Non-Coding
39	NC_017951	CGTTGA	2	12	1024417	1024428	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
40	NC_017951	TAAAAT	2	12	1042693	1042704	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.