MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Streptococcus suis ST1 chromosome

Total Repeats: 125

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017950	TGGAAG	2	12	21870	21881	33.33 %	16.67 %	50 %	0 %	Non-Coding
2	NC_017950	TGAACT	2	12	49904	49915	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
3	NC_017950	AGTCTA	2	12	60406	60417	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_017950	TGGAAG	2	12	103840	103851	33.33 %	16.67 %	50 %	0 %	Non-Coding
5	NC_017950	TTCGGG	2	12	104775	104786	0 %	33.33 %	50 %	16.67 %	Non-Coding
6	NC_017950	TATTCT	2	12	109217	109228	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
7	NC_017950	ATGACA	2	12	131288	131299	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
8	NC_017950	CAGAAA	2	12	131880	131891	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
9	NC_017950	GGCTTC	2	12	155573	155584	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
10	NC_017950	ACTAAG	2	12	163757	163768	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
11	NC_017950	GTTATA	2	12	168856	168867	33.33 %	50 %	16.67 %	0 %	Non-Coding
12	NC_017950	TGATTT	2	12	198158	198169	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
13	NC_017950	ATCTGC	2	12	217009	217020	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
14	NC_017950	AAAATT	2	12	219373	219384	66.67 %	33.33 %	0 %	0 %	Non-Coding
15	NC_017950	GAGTGG	2	12	225056	225067	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
16	NC_017950	CAGCCT	2	12	225222	225233	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
17	NC_017950	TGATTT	2	12	225343	225354	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
18	NC_017950	TTTTTC	2	12	259740	259751	0 %	83.33 %	0 %	16.67 %	Non-Coding
19	NC_017950	AACCAA	2	12	266255	266266	66.67 %	0 %	0 %	33.33 %	Non-Coding
20	NC_017950	TAGAAA	2	12	292193	292204	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
21	NC_017950	GCTAAA	2	12	294926	294937	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
22	NC_017950	TGGAAG	2	12	344990	345001	33.33 %	16.67 %	50 %	0 %	Non-Coding
23	NC_017950	ATCTGC	2	12	373157	373168	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
24	NC_017950	TTGGTA	2	12	385787	385798	16.67 %	50 %	33.33 %	0 %	Non-Coding
25	NC_017950	TCTTTT	2	12	394425	394436	0 %	83.33 %	0 %	16.67 %	Non-Coding
26	NC_017950	TAGCAG	2	12	401468	401479	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
27	NC_017950	TGGAAG	2	12	438721	438732	33.33 %	16.67 %	50 %	0 %	Non-Coding
28	NC_017950	ATTGTA	2	12	443853	443864	33.33 %	50 %	16.67 %	0 %	Non-Coding
29	NC_017950	TTCAAC	2	12	457563	457574	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
30	NC_017950	TAAAAA	2	12	459958	459969	83.33 %	16.67 %	0 %	0 %	Non-Coding
31	NC_017950	TCAATC	2	12	472750	472761	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
32	NC_017950	AACCTC	2	12	474715	474726	33.33 %	16.67 %	0 %	50 %	Non-Coding
33	NC_017950	TAAAGA	2	12	506843	506854	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
34	NC_017950	TGAAGG	2	12	507410	507421	33.33 %	16.67 %	50 %	0 %	Non-Coding
35	NC_017950	ACCTAT	2	12	514236	514247	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
36	NC_017950	GAGAAG	2	12	539518	539529	50 %	0 %	50 %	0 %	Non-Coding
37	NC_017950	CTGAGC	2	12	544693	544704	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
38	NC_017950	TCCTTT	2	12	548050	548061	0 %	66.67 %	0 %	33.33 %	Non-Coding
39	NC_017950	AAAAGT	2	12	550876	550887	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
40	NC_017950	AAAAAG	2	12	553094	553105	83.33 %	0 %	16.67 %	0 %	Non-Coding
41	NC_017950	TTATTG	2	12	555200	555211	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
42	NC_017950	AAAATC	2	12	594552	594563	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
43	NC_017950	GCAGAT	2	12	594576	594587	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
44	NC_017950	TGATTT	2	12	594623	594634	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
45	NC_017950	AAAATC	2	12	637515	637526	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
46	NC_017950	GATTCG	2	12	648178	648189	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
47	NC_017950	GCGGGA	2	12	665363	665374	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
48	NC_017950	CAGGTG	2	12	680127	680138	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
49	NC_017950	CAGGTG	2	12	680427	680438	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
50	NC_017950	CAGGTG	2	12	680727	680738	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
51	NC_017950	CAGGTG	2	12	681035	681046	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
52	NC_017950	CAGGTG	2	12	681335	681346	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
53	NC_017950	CAGGTG	2	12	681635	681646	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
54	NC_017950	CAGGTA	2	12	682300	682311	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
55	NC_017950	AGAAAA	2	12	686420	686431	83.33 %	0 %	16.67 %	0 %	Non-Coding
56	NC_017950	ATGTAA	2	12	702307	702318	50 %	33.33 %	16.67 %	0 %	Non-Coding
57	NC_017950	AAAATC	2	12	708488	708499	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
58	NC_017950	ATCTGC	2	12	708536	708547	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
59	NC_017950	AAAATC	2	12	717885	717896	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
60	NC_017950	AAATGT	2	12	745221	745232	50 %	33.33 %	16.67 %	0 %	Non-Coding
61	NC_017950	ATATTA	2	12	760251	760262	50 %	50 %	0 %	0 %	Non-Coding
62	NC_017950	AAAATC	2	12	776819	776830	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
63	NC_017950	CTTTAT	2	12	833845	833856	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
64	NC_017950	AAGAAA	2	12	852246	852257	83.33 %	0 %	16.67 %	0 %	Non-Coding
65	NC_017950	TTTGAA	2	12	903406	903417	33.33 %	50 %	16.67 %	0 %	Non-Coding
66	NC_017950	TGTCCC	2	12	916419	916430	0 %	33.33 %	16.67 %	50 %	Non-Coding
67	NC_017950	TTCAAA	2	12	921713	921724	50 %	33.33 %	0 %	16.67 %	Non-Coding
68	NC_017950	TAAAAA	2	12	976140	976151	83.33 %	16.67 %	0 %	0 %	Non-Coding
69	NC_017950	GTGGGA	2	12	980018	980029	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
70	NC_017950	TTTTCC	2	12	1000930	1000941	0 %	66.67 %	0 %	33.33 %	Non-Coding
71	NC_017950	AGCAAG	2	12	1001459	1001470	50 %	0 %	33.33 %	16.67 %	Non-Coding
72	NC_017950	CATATT	2	12	1019356	1019367	33.33 %	50 %	0 %	16.67 %	Non-Coding
73	NC_017950	AAAATC	2	12	1031420	1031431	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
74	NC_017950	CCCGAA	2	12	1056899	1056910	33.33 %	0 %	16.67 %	50 %	Non-Coding
75	NC_017950	TGCAAG	2	12	1057287	1057298	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
76	NC_017950	GCTCTG	2	12	1128789	1128800	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
77	NC_017950	AGAATA	2	12	1138706	1138717	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
78	NC_017950	AAAATC	2	12	1141519	1141530	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
79	NC_017950	GCAGAT	2	12	1141543	1141554	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
80	NC_017950	TGATTT	2	12	1141590	1141601	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
81	NC_017950	ATTTTT	2	12	1191004	1191015	16.67 %	83.33 %	0 %	0 %	Non-Coding
82	NC_017950	ACCTAC	2	12	1196605	1196616	33.33 %	16.67 %	0 %	50 %	Non-Coding
83	NC_017950	TTTCCT	2	12	1200101	1200112	0 %	66.67 %	0 %	33.33 %	Non-Coding
84	NC_017950	AAATTG	2	12	1209489	1209500	50 %	33.33 %	16.67 %	0 %	Non-Coding
85	NC_017950	CAAATA	2	12	1209946	1209957	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
86	NC_017950	ACTCCA	2	12	1215256	1215267	33.33 %	16.67 %	0 %	50 %	Non-Coding
87	NC_017950	GGAAAA	2	12	1241626	1241637	66.67 %	0 %	33.33 %	0 %	Non-Coding
88	NC_017950	TGCCTG	2	12	1243428	1243439	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
89	NC_017950	CAATGG	2	12	1244739	1244750	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
90	NC_017950	TTTCTA	2	12	1249388	1249399	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
91	NC_017950	TCGCAC	2	12	1249792	1249803	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
92	NC_017950	ATTTAT	2	12	1261133	1261144	33.33 %	66.67 %	0 %	0 %	Non-Coding
93	NC_017950	TTCAAT	2	12	1323288	1323299	33.33 %	50 %	0 %	16.67 %	Non-Coding
94	NC_017950	TATTTA	2	12	1332274	1332285	33.33 %	66.67 %	0 %	0 %	Non-Coding
95	NC_017950	TAGCCA	2	12	1333372	1333383	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
96	NC_017950	AAATCA	2	12	1336578	1336589	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
97	NC_017950	TATCAA	2	12	1378596	1378607	50 %	33.33 %	0 %	16.67 %	Non-Coding
98	NC_017950	TAAAAA	2	12	1384261	1384272	83.33 %	16.67 %	0 %	0 %	Non-Coding
99	NC_017950	ATGAGT	2	12	1423171	1423182	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
100	NC_017950	TTTATG	2	12	1497016	1497027	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
101	NC_017950	AGGAAC	2	12	1498053	1498064	50 %	0 %	33.33 %	16.67 %	Non-Coding
102	NC_017950	TTCTGA	2	12	1499806	1499817	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
103	NC_017950	AAAATC	2	12	1503235	1503246	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
104	NC_017950	GCAGAT	2	12	1503259	1503270	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
105	NC_017950	TGATTT	2	12	1503306	1503317	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
106	NC_017950	AAAATC	2	12	1521430	1521441	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
107	NC_017950	TGATTT	2	12	1521606	1521617	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
108	NC_017950	ATAAAA	2	12	1527130	1527141	83.33 %	16.67 %	0 %	0 %	Non-Coding
109	NC_017950	TGATTT	2	12	1528888	1528899	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
110	NC_017950	TCCCAG	2	12	1545573	1545584	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
111	NC_017950	TGATTT	2	12	1590726	1590737	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
112	NC_017950	AGCCCA	2	12	1606264	1606275	33.33 %	0 %	16.67 %	50 %	Non-Coding
113	NC_017950	ATTTTT	2	12	1728844	1728855	16.67 %	83.33 %	0 %	0 %	Non-Coding
114	NC_017950	AATAGA	2	12	1737687	1737698	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
115	NC_017950	CTCCAC	2	12	1815893	1815904	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
116	NC_017950	GAAAGC	2	12	1823656	1823667	50 %	0 %	33.33 %	16.67 %	Non-Coding
117	NC_017950	TTGTTT	2	12	1826044	1826055	0 %	83.33 %	16.67 %	0 %	Non-Coding
118	NC_017950	AAAGAA	2	12	1849390	1849401	83.33 %	0 %	16.67 %	0 %	Non-Coding
119	NC_017950	ACAAAA	2	12	1865936	1865947	83.33 %	0 %	0 %	16.67 %	Non-Coding
120	NC_017950	CTTACA	2	12	1865956	1865967	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
121	NC_017950	TTTATT	2	12	1872199	1872210	16.67 %	83.33 %	0 %	0 %	Non-Coding
122	NC_017950	TTTTAT	2	12	1938197	1938208	16.67 %	83.33 %	0 %	0 %	Non-Coding
123	NC_017950	TTTATA	2	12	1945980	1945991	33.33 %	66.67 %	0 %	0 %	Non-Coding
124	NC_017950	ATTTTT	2	12	1952495	1952506	16.67 %	83.33 %	0 %	0 %	Non-Coding
125	NC_017950	CTTTCT	2	12	1959569	1959580	0 %	66.67 %	0 %	33.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.