MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Methylophaga sp. JAM7 chromosome

Total Repeats: 51

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017856	ACACAA	2	12	223357	223368	66.67 %	0 %	0 %	33.33 %	Non-Coding
2	NC_017856	TGCTTA	2	12	232887	232898	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
3	NC_017856	CGTCGG	2	12	236525	236536	0 %	16.67 %	50 %	33.33 %	Non-Coding
4	NC_017856	ATCAAG	2	12	358662	358673	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
5	NC_017856	ACCTCA	2	12	369703	369714	33.33 %	16.67 %	0 %	50 %	Non-Coding
6	NC_017856	ATAATG	2	12	448684	448695	50 %	33.33 %	16.67 %	0 %	Non-Coding
7	NC_017856	ACTGAT	2	12	469479	469490	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
8	NC_017856	AAGTTC	2	12	539219	539230	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
9	NC_017856	AAAAAC	2	12	630358	630369	83.33 %	0 %	0 %	16.67 %	Non-Coding
10	NC_017856	TGCTTA	2	12	702565	702576	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
11	NC_017856	TCTGTT	2	12	742469	742480	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
12	NC_017856	ACTGTC	2	12	762204	762215	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
13	NC_017856	ACTGCC	2	12	809232	809243	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
14	NC_017856	CAGCTG	2	12	877244	877255	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
15	NC_017856	GCAGTC	2	12	889924	889935	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
16	NC_017856	CAATTT	2	12	1022956	1022967	33.33 %	50 %	0 %	16.67 %	Non-Coding
17	NC_017856	TTTCTT	2	12	1061754	1061765	0 %	83.33 %	0 %	16.67 %	Non-Coding
18	NC_017856	TTGTCG	2	12	1180899	1180910	0 %	50 %	33.33 %	16.67 %	Non-Coding
19	NC_017856	CCCAGC	2	12	1198629	1198640	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
20	NC_017856	AAATAA	2	12	1225421	1225432	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_017856	TTCAAA	2	12	1257527	1257538	50 %	33.33 %	0 %	16.67 %	Non-Coding
22	NC_017856	TTAGTT	2	12	1300193	1300204	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
23	NC_017856	AATCAG	2	12	1340035	1340046	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
24	NC_017856	GTCATC	2	12	1455229	1455240	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
25	NC_017856	AACGGC	2	12	1534514	1534525	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
26	NC_017856	TAAGAA	2	12	1562569	1562580	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
27	NC_017856	CAGAAA	2	12	1576522	1576533	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
28	NC_017856	CAACCA	2	12	1581399	1581410	50 %	0 %	0 %	50 %	Non-Coding
29	NC_017856	ACCTTC	3	18	1581452	1581469	16.67 %	33.33 %	0 %	50 %	Non-Coding
30	NC_017856	TCATTT	2	12	1605597	1605608	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
31	NC_017856	AATCTT	2	12	1607236	1607247	33.33 %	50 %	0 %	16.67 %	Non-Coding
32	NC_017856	CAATTT	2	12	1723160	1723171	33.33 %	50 %	0 %	16.67 %	Non-Coding
33	NC_017856	GTCGCT	2	12	1745663	1745674	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
34	NC_017856	CTGCTC	2	12	1751286	1751297	0 %	33.33 %	16.67 %	50 %	Non-Coding
35	NC_017856	ATAGAA	2	12	2038036	2038047	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
36	NC_017856	ATAACA	2	12	2044717	2044728	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
37	NC_017856	CTGTGC	2	12	2092035	2092046	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
38	NC_017856	AATGAA	2	12	2127289	2127300	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
39	NC_017856	TTTGTT	2	12	2210512	2210523	0 %	83.33 %	16.67 %	0 %	Non-Coding
40	NC_017856	CTGCCG	2	12	2331893	2331904	0 %	16.67 %	33.33 %	50 %	Non-Coding
41	NC_017856	AATTGT	2	12	2350772	2350783	33.33 %	50 %	16.67 %	0 %	Non-Coding
42	NC_017856	TTGATT	2	12	2382556	2382567	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
43	NC_017856	AGTCGC	2	12	2384013	2384024	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
44	NC_017856	TGAAAT	2	12	2418235	2418246	50 %	33.33 %	16.67 %	0 %	Non-Coding
45	NC_017856	CTCCAT	2	12	2542151	2542162	16.67 %	33.33 %	0 %	50 %	Non-Coding
46	NC_017856	TGTGGG	2	12	2545070	2545081	0 %	33.33 %	66.67 %	0 %	Non-Coding
47	NC_017856	CGTTAT	2	12	2586945	2586956	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
48	NC_017856	AAGATT	2	12	2588675	2588686	50 %	33.33 %	16.67 %	0 %	Non-Coding
49	NC_017856	AAATAT	2	12	2598105	2598116	66.67 %	33.33 %	0 %	0 %	Non-Coding
50	NC_017856	AACCAT	2	12	2604768	2604779	50 %	16.67 %	0 %	33.33 %	Non-Coding
51	NC_017856	TACGAA	2	12	2613302	2613313	50 %	16.67 %	16.67 %	16.67 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.