MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Rahnella aquatilis HX2 plasmid PRA2

Total Repeats: 151

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017773	CTG	2	6	399	404	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
2	NC_017773	TGA	2	6	543	548	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
3	NC_017773	CTG	2	6	618	623	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
4	NC_017773	GCT	2	6	4218	4223	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
5	NC_017773	AGC	2	6	4231	4236	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
6	NC_017773	CAG	2	6	4254	4259	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
7	NC_017773	AGG	2	6	4313	4318	33.33 %	0 %	66.67 %	0 %	Non-Coding
8	NC_017773	CTT	2	6	4352	4357	0 %	66.67 %	0 %	33.33 %	Non-Coding
9	NC_017773	CTG	2	6	5721	5726	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
10	NC_017773	TGC	2	6	5806	5811	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
11	NC_017773	CAG	2	6	6653	6658	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12	NC_017773	ATC	2	6	6661	6666	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
13	NC_017773	GTC	2	6	6687	6692	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
14	NC_017773	ATG	2	6	7339	7344	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
15	NC_017773	TAG	2	6	7353	7358	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
16	NC_017773	CTG	2	6	7373	7378	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
17	NC_017773	TCA	2	6	7399	7404	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
18	NC_017773	ACT	2	6	9459	9464	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19	NC_017773	AAC	2	6	9887	9892	66.67 %	0 %	0 %	33.33 %	Non-Coding
20	NC_017773	CAG	2	6	9950	9955	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
21	NC_017773	AAT	2	6	10469	10474	66.67 %	33.33 %	0 %	0 %	Non-Coding
22	NC_017773	AAT	2	6	11161	11166	66.67 %	33.33 %	0 %	0 %	Non-Coding
23	NC_017773	TAG	2	6	11280	11285	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
24	NC_017773	TGG	2	6	11289	11294	0 %	33.33 %	66.67 %	0 %	Non-Coding
25	NC_017773	GAA	2	6	11400	11405	66.67 %	0 %	33.33 %	0 %	Non-Coding
26	NC_017773	AAC	2	6	11483	11488	66.67 %	0 %	0 %	33.33 %	Non-Coding
27	NC_017773	AGT	2	6	11879	11884	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
28	NC_017773	TGA	2	6	12023	12028	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
29	NC_017773	AAC	2	6	12138	12143	66.67 %	0 %	0 %	33.33 %	Non-Coding
30	NC_017773	ATC	2	6	12152	12157	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
31	NC_017773	ATT	2	6	12159	12164	33.33 %	66.67 %	0 %	0 %	Non-Coding
32	NC_017773	AGG	2	6	12359	12364	33.33 %	0 %	66.67 %	0 %	Non-Coding
33	NC_017773	ATT	2	6	12455	12460	33.33 %	66.67 %	0 %	0 %	Non-Coding
34	NC_017773	TAA	2	6	12478	12483	66.67 %	33.33 %	0 %	0 %	Non-Coding
35	NC_017773	TGA	2	6	12544	12549	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
36	NC_017773	CTC	2	6	12628	12633	0 %	33.33 %	0 %	66.67 %	Non-Coding
37	NC_017773	TGT	2	6	12834	12839	0 %	66.67 %	33.33 %	0 %	Non-Coding
38	NC_017773	GAA	2	6	12883	12888	66.67 %	0 %	33.33 %	0 %	Non-Coding
39	NC_017773	AGG	2	6	14398	14403	33.33 %	0 %	66.67 %	0 %	Non-Coding
40	NC_017773	CTT	2	6	14405	14410	0 %	66.67 %	0 %	33.33 %	Non-Coding
41	NC_017773	TAA	2	6	15175	15180	66.67 %	33.33 %	0 %	0 %	Non-Coding
42	NC_017773	CTA	2	6	15377	15382	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
43	NC_017773	GGA	2	6	15437	15442	33.33 %	0 %	66.67 %	0 %	Non-Coding
44	NC_017773	CTG	2	6	15455	15460	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
45	NC_017773	GGC	2	6	15508	15513	0 %	0 %	66.67 %	33.33 %	Non-Coding
46	NC_017773	TGA	2	6	16289	16294	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
47	NC_017773	TAA	2	6	16390	16395	66.67 %	33.33 %	0 %	0 %	Non-Coding
48	NC_017773	TTA	2	6	16420	16425	33.33 %	66.67 %	0 %	0 %	Non-Coding
49	NC_017773	TGA	2	6	16508	16513	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
50	NC_017773	GCT	2	6	19334	19339	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
51	NC_017773	CGG	2	6	19381	19386	0 %	0 %	66.67 %	33.33 %	Non-Coding
52	NC_017773	CAA	2	6	19459	19464	66.67 %	0 %	0 %	33.33 %	Non-Coding
53	NC_017773	TGA	2	6	20640	20645	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
54	NC_017773	GAA	2	6	20669	20674	66.67 %	0 %	33.33 %	0 %	Non-Coding
55	NC_017773	TCA	2	6	20722	20727	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
56	NC_017773	ATC	2	6	20799	20804	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
57	NC_017773	TCC	2	6	20898	20903	0 %	33.33 %	0 %	66.67 %	Non-Coding
58	NC_017773	AGC	2	6	21693	21698	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
59	NC_017773	AGA	2	6	21790	21795	66.67 %	0 %	33.33 %	0 %	Non-Coding
60	NC_017773	GAT	2	6	21975	21980	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
61	NC_017773	TTA	2	6	22614	22619	33.33 %	66.67 %	0 %	0 %	Non-Coding
62	NC_017773	TAT	2	6	23510	23515	33.33 %	66.67 %	0 %	0 %	Non-Coding
63	NC_017773	GAA	2	6	25122	25127	66.67 %	0 %	33.33 %	0 %	Non-Coding
64	NC_017773	TGC	2	6	25159	25164	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
65	NC_017773	TTA	2	6	25887	25892	33.33 %	66.67 %	0 %	0 %	Non-Coding
66	NC_017773	TTA	2	6	25909	25914	33.33 %	66.67 %	0 %	0 %	Non-Coding
67	NC_017773	ACA	2	6	27406	27411	66.67 %	0 %	0 %	33.33 %	Non-Coding
68	NC_017773	TCA	2	6	27454	27459	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
69	NC_017773	ATT	2	6	27467	27472	33.33 %	66.67 %	0 %	0 %	Non-Coding
70	NC_017773	GAC	2	6	29963	29968	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
71	NC_017773	GAG	2	6	31875	31880	33.33 %	0 %	66.67 %	0 %	Non-Coding
72	NC_017773	CGT	2	6	32600	32605	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
73	NC_017773	AGG	2	6	36136	36141	33.33 %	0 %	66.67 %	0 %	Non-Coding
74	NC_017773	CTT	2	6	41384	41389	0 %	66.67 %	0 %	33.33 %	Non-Coding
75	NC_017773	GGT	2	6	44735	44740	0 %	33.33 %	66.67 %	0 %	Non-Coding
76	NC_017773	TTG	2	6	44750	44755	0 %	66.67 %	33.33 %	0 %	Non-Coding
77	NC_017773	TAA	2	6	44827	44832	66.67 %	33.33 %	0 %	0 %	Non-Coding
78	NC_017773	CGG	2	6	44855	44860	0 %	0 %	66.67 %	33.33 %	Non-Coding
79	NC_017773	CTG	2	6	44889	44894	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
80	NC_017773	ATA	2	6	46866	46871	66.67 %	33.33 %	0 %	0 %	Non-Coding
81	NC_017773	CCG	2	6	46888	46893	0 %	0 %	33.33 %	66.67 %	Non-Coding
82	NC_017773	TCA	2	6	46981	46986	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
83	NC_017773	ATC	2	6	48917	48922	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
84	NC_017773	TTA	2	6	48941	48946	33.33 %	66.67 %	0 %	0 %	Non-Coding
85	NC_017773	GAC	2	6	48962	48967	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
86	NC_017773	AGG	2	6	52628	52633	33.33 %	0 %	66.67 %	0 %	Non-Coding
87	NC_017773	GTA	2	6	52738	52743	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
88	NC_017773	GCG	2	6	52857	52862	0 %	0 %	66.67 %	33.33 %	Non-Coding
89	NC_017773	CTG	2	6	52876	52881	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
90	NC_017773	AAC	2	6	52970	52975	66.67 %	0 %	0 %	33.33 %	Non-Coding
91	NC_017773	GCA	2	6	53335	53340	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
92	NC_017773	ATA	2	6	53355	53360	66.67 %	33.33 %	0 %	0 %	Non-Coding
93	NC_017773	CTT	2	6	53432	53437	0 %	66.67 %	0 %	33.33 %	Non-Coding
94	NC_017773	TTA	2	6	55035	55040	33.33 %	66.67 %	0 %	0 %	Non-Coding
95	NC_017773	AAT	2	6	55091	55096	66.67 %	33.33 %	0 %	0 %	Non-Coding
96	NC_017773	GCA	2	6	55132	55137	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
97	NC_017773	ATT	2	6	55140	55145	33.33 %	66.67 %	0 %	0 %	Non-Coding
98	NC_017773	ATG	2	6	55220	55225	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
99	NC_017773	GAA	2	6	56557	56562	66.67 %	0 %	33.33 %	0 %	Non-Coding
100	NC_017773	TGA	2	6	56570	56575	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
101	NC_017773	ATG	2	6	56612	56617	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
102	NC_017773	ACT	2	6	57795	57800	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
103	NC_017773	TAA	2	6	58548	58553	66.67 %	33.33 %	0 %	0 %	Non-Coding
104	NC_017773	TGT	2	6	58603	58608	0 %	66.67 %	33.33 %	0 %	Non-Coding
105	NC_017773	AGT	2	6	59387	59392	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
106	NC_017773	ATT	2	6	59463	59468	33.33 %	66.67 %	0 %	0 %	Non-Coding
107	NC_017773	CAC	2	6	59481	59486	33.33 %	0 %	0 %	66.67 %	Non-Coding
108	NC_017773	TAA	2	6	60097	60102	66.67 %	33.33 %	0 %	0 %	Non-Coding
109	NC_017773	GTT	2	6	60107	60112	0 %	66.67 %	33.33 %	0 %	Non-Coding
110	NC_017773	ATT	2	6	60191	60196	33.33 %	66.67 %	0 %	0 %	Non-Coding
111	NC_017773	AGT	2	6	60217	60222	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
112	NC_017773	TGA	2	6	61323	61328	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
113	NC_017773	CTG	2	6	61370	61375	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
114	NC_017773	GGT	2	6	65282	65287	0 %	33.33 %	66.67 %	0 %	Non-Coding
115	NC_017773	ATT	2	6	65297	65302	33.33 %	66.67 %	0 %	0 %	Non-Coding
116	NC_017773	CTT	2	6	65324	65329	0 %	66.67 %	0 %	33.33 %	Non-Coding
117	NC_017773	CAG	2	6	65336	65341	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
118	NC_017773	ATT	2	6	65346	65351	33.33 %	66.67 %	0 %	0 %	Non-Coding
119	NC_017773	ACA	2	6	65357	65362	66.67 %	0 %	0 %	33.33 %	Non-Coding
120	NC_017773	GGA	2	6	65439	65444	33.33 %	0 %	66.67 %	0 %	Non-Coding
121	NC_017773	GAC	2	6	65665	65670	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
122	NC_017773	ATT	2	6	65685	65690	33.33 %	66.67 %	0 %	0 %	Non-Coding
123	NC_017773	ATT	2	6	65766	65771	33.33 %	66.67 %	0 %	0 %	Non-Coding
124	NC_017773	ATG	2	6	66235	66240	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
125	NC_017773	TCA	2	6	66332	66337	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
126	NC_017773	ACC	2	6	66398	66403	33.33 %	0 %	0 %	66.67 %	Non-Coding
127	NC_017773	AAC	2	6	66417	66422	66.67 %	0 %	0 %	33.33 %	Non-Coding
128	NC_017773	GCA	2	6	66614	66619	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
129	NC_017773	GAT	2	6	66621	66626	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
130	NC_017773	CCT	2	6	66675	66680	0 %	33.33 %	0 %	66.67 %	Non-Coding
131	NC_017773	TAA	2	6	66691	66696	66.67 %	33.33 %	0 %	0 %	Non-Coding
132	NC_017773	AAT	2	6	68141	68146	66.67 %	33.33 %	0 %	0 %	Non-Coding
133	NC_017773	CTT	2	6	69285	69290	0 %	66.67 %	0 %	33.33 %	Non-Coding
134	NC_017773	TGG	2	6	69316	69321	0 %	33.33 %	66.67 %	0 %	Non-Coding
135	NC_017773	TGA	2	6	69366	69371	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
136	NC_017773	GAC	2	6	69444	69449	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
137	NC_017773	AGA	2	6	69483	69488	66.67 %	0 %	33.33 %	0 %	Non-Coding
138	NC_017773	CCA	2	6	70854	70859	33.33 %	0 %	0 %	66.67 %	Non-Coding
139	NC_017773	ATG	2	6	70895	70900	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
140	NC_017773	TCA	2	6	70902	70907	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
141	NC_017773	GAA	2	6	70969	70974	66.67 %	0 %	33.33 %	0 %	Non-Coding
142	NC_017773	CCT	2	6	70981	70986	0 %	33.33 %	0 %	66.67 %	Non-Coding
143	NC_017773	TAG	2	6	71105	71110	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
144	NC_017773	CGC	2	6	71281	71286	0 %	0 %	33.33 %	66.67 %	Non-Coding
145	NC_017773	GTA	2	6	71782	71787	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
146	NC_017773	CTA	2	6	71797	71802	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
147	NC_017773	CAT	2	6	71910	71915	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
148	NC_017773	TAA	2	6	73030	73035	66.67 %	33.33 %	0 %	0 %	Non-Coding
149	NC_017773	AAT	2	6	74527	74532	66.67 %	33.33 %	0 %	0 %	Non-Coding
150	NC_017773	AAC	2	6	74535	74540	66.67 %	0 %	0 %	33.33 %	Non-Coding
151	NC_017773	TAA	2	6	75059	75064	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.