MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Lactobacillus casei BD-II plasmid pBD-II

Total Repeats: 100

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017476	GCC	2	6	35	40	0 %	0 %	33.33 %	66.67 %	Non-Coding
2	NC_017476	CAG	2	6	52	57	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
3	NC_017476	TGA	2	6	102	107	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
4	NC_017476	ACC	2	6	459	464	33.33 %	0 %	0 %	66.67 %	Non-Coding
5	NC_017476	TAA	2	6	506	511	66.67 %	33.33 %	0 %	0 %	Non-Coding
6	NC_017476	TAT	2	6	512	517	33.33 %	66.67 %	0 %	0 %	Non-Coding
7	NC_017476	GAG	2	6	618	623	33.33 %	0 %	66.67 %	0 %	Non-Coding
8	NC_017476	TAC	2	6	661	666	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
9	NC_017476	GTC	2	6	667	672	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
10	NC_017476	ACC	2	6	716	721	33.33 %	0 %	0 %	66.67 %	Non-Coding
11	NC_017476	CTT	2	6	4757	4762	0 %	66.67 %	0 %	33.33 %	Non-Coding
12	NC_017476	CAA	2	6	5391	5396	66.67 %	0 %	0 %	33.33 %	Non-Coding
13	NC_017476	TGG	2	6	7258	7263	0 %	33.33 %	66.67 %	0 %	Non-Coding
14	NC_017476	CAT	2	6	7446	7451	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
15	NC_017476	CCT	2	6	7547	7552	0 %	33.33 %	0 %	66.67 %	Non-Coding
16	NC_017476	TCC	2	6	8353	8358	0 %	33.33 %	0 %	66.67 %	Non-Coding
17	NC_017476	TTG	2	6	13331	13336	0 %	66.67 %	33.33 %	0 %	Non-Coding
18	NC_017476	GAT	2	6	13346	13351	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
19	NC_017476	CCT	2	6	14464	14469	0 %	33.33 %	0 %	66.67 %	Non-Coding
20	NC_017476	TGT	2	6	14682	14687	0 %	66.67 %	33.33 %	0 %	Non-Coding
21	NC_017476	TCC	2	6	14688	14693	0 %	33.33 %	0 %	66.67 %	Non-Coding
22	NC_017476	TCC	2	6	18619	18624	0 %	33.33 %	0 %	66.67 %	Non-Coding
23	NC_017476	TGT	2	6	19313	19318	0 %	66.67 %	33.33 %	0 %	Non-Coding
24	NC_017476	TAA	2	6	19385	19390	66.67 %	33.33 %	0 %	0 %	Non-Coding
25	NC_017476	TCC	2	6	19763	19768	0 %	33.33 %	0 %	66.67 %	Non-Coding
26	NC_017476	AGT	2	6	20600	20605	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
27	NC_017476	AGA	2	6	23367	23372	66.67 %	0 %	33.33 %	0 %	Non-Coding
28	NC_017476	GTG	2	6	24235	24240	0 %	33.33 %	66.67 %	0 %	Non-Coding
29	NC_017476	GGC	2	6	24260	24265	0 %	0 %	66.67 %	33.33 %	Non-Coding
30	NC_017476	CGG	2	6	24270	24275	0 %	0 %	66.67 %	33.33 %	Non-Coding
31	NC_017476	GAT	2	6	24300	24305	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
32	NC_017476	ACG	2	6	24433	24438	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
33	NC_017476	GTT	2	6	24467	24472	0 %	66.67 %	33.33 %	0 %	Non-Coding
34	NC_017476	ACG	2	6	27063	27068	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
35	NC_017476	GTA	2	6	27237	27242	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
36	NC_017476	ACG	2	6	27284	27289	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
37	NC_017476	TGA	2	6	27505	27510	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
38	NC_017476	GTC	2	6	27522	27527	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
39	NC_017476	GTT	2	6	27557	27562	0 %	66.67 %	33.33 %	0 %	Non-Coding
40	NC_017476	CTA	2	6	27566	27571	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
41	NC_017476	AAC	2	6	27579	27584	66.67 %	0 %	0 %	33.33 %	Non-Coding
42	NC_017476	TAG	2	6	27585	27590	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
43	NC_017476	TAT	2	6	27821	27826	33.33 %	66.67 %	0 %	0 %	Non-Coding
44	NC_017476	ATT	2	6	27954	27959	33.33 %	66.67 %	0 %	0 %	Non-Coding
45	NC_017476	TTG	2	6	28056	28061	0 %	66.67 %	33.33 %	0 %	Non-Coding
46	NC_017476	TAT	2	6	32905	32910	33.33 %	66.67 %	0 %	0 %	Non-Coding
47	NC_017476	CAA	2	6	33147	33152	66.67 %	0 %	0 %	33.33 %	Non-Coding
48	NC_017476	CTA	2	6	33234	33239	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
49	NC_017476	ATG	2	6	33346	33351	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
50	NC_017476	TTG	2	6	33378	33383	0 %	66.67 %	33.33 %	0 %	Non-Coding
51	NC_017476	AAC	2	6	33390	33395	66.67 %	0 %	0 %	33.33 %	Non-Coding
52	NC_017476	TTA	2	6	34533	34538	33.33 %	66.67 %	0 %	0 %	Non-Coding
53	NC_017476	TGA	2	6	36268	36273	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
54	NC_017476	ATC	2	6	36298	36303	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
55	NC_017476	CGT	2	6	36493	36498	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
56	NC_017476	TAC	2	6	36540	36545	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
57	NC_017476	CGT	2	6	36715	36720	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
58	NC_017476	ACG	2	6	37105	37110	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
59	NC_017476	GTA	2	6	37280	37285	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
60	NC_017476	ACG	2	6	37327	37332	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
61	NC_017476	TAA	2	6	38455	38460	66.67 %	33.33 %	0 %	0 %	Non-Coding
62	NC_017476	ATC	2	6	38651	38656	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
63	NC_017476	CCT	2	6	39260	39265	0 %	33.33 %	0 %	66.67 %	Non-Coding
64	NC_017476	AAG	2	6	39330	39335	66.67 %	0 %	33.33 %	0 %	Non-Coding
65	NC_017476	CGT	2	6	40618	40623	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
66	NC_017476	TGG	2	6	40699	40704	0 %	33.33 %	66.67 %	0 %	Non-Coding
67	NC_017476	GTC	2	6	41226	41231	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
68	NC_017476	TAA	2	6	41251	41256	66.67 %	33.33 %	0 %	0 %	Non-Coding
69	NC_017476	ACA	2	6	46247	46252	66.67 %	0 %	0 %	33.33 %	Non-Coding
70	NC_017476	TTA	2	6	46272	46277	33.33 %	66.67 %	0 %	0 %	Non-Coding
71	NC_017476	ATA	2	6	46412	46417	66.67 %	33.33 %	0 %	0 %	Non-Coding
72	NC_017476	GAT	2	6	46457	46462	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
73	NC_017476	GTC	2	6	47752	47757	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
74	NC_017476	CTC	2	6	47821	47826	0 %	33.33 %	0 %	66.67 %	Non-Coding
75	NC_017476	CAG	2	6	47855	47860	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
76	NC_017476	CAA	2	6	47883	47888	66.67 %	0 %	0 %	33.33 %	Non-Coding
77	NC_017476	GAA	2	6	47942	47947	66.67 %	0 %	33.33 %	0 %	Non-Coding
78	NC_017476	TCC	2	6	48281	48286	0 %	33.33 %	0 %	66.67 %	Non-Coding
79	NC_017476	TGT	2	6	48354	48359	0 %	66.67 %	33.33 %	0 %	Non-Coding
80	NC_017476	TAA	2	6	48433	48438	66.67 %	33.33 %	0 %	0 %	Non-Coding
81	NC_017476	AGG	2	6	48454	48459	33.33 %	0 %	66.67 %	0 %	Non-Coding
82	NC_017476	TAT	2	6	48464	48469	33.33 %	66.67 %	0 %	0 %	Non-Coding
83	NC_017476	ATT	3	9	52004	52012	33.33 %	66.67 %	0 %	0 %	Non-Coding
84	NC_017476	GTT	2	6	52058	52063	0 %	66.67 %	33.33 %	0 %	Non-Coding
85	NC_017476	TAA	2	6	53944	53949	66.67 %	33.33 %	0 %	0 %	Non-Coding
86	NC_017476	AGC	2	6	54299	54304	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
87	NC_017476	CAG	2	6	54334	54339	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
88	NC_017476	TGC	2	6	54373	54378	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
89	NC_017476	GTT	2	6	54395	54400	0 %	66.67 %	33.33 %	0 %	Non-Coding
90	NC_017476	ATG	2	6	54654	54659	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
91	NC_017476	GCC	2	6	54816	54821	0 %	0 %	33.33 %	66.67 %	Non-Coding
92	NC_017476	TGC	2	6	54879	54884	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
93	NC_017476	GGT	2	6	54941	54946	0 %	33.33 %	66.67 %	0 %	Non-Coding
94	NC_017476	GTC	2	6	54964	54969	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
95	NC_017476	TTA	2	6	55066	55071	33.33 %	66.67 %	0 %	0 %	Non-Coding
96	NC_017476	CAT	2	6	55122	55127	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
97	NC_017476	AGT	2	6	55149	55154	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
98	NC_017476	AAG	2	6	56114	56119	66.67 %	0 %	33.33 %	0 %	Non-Coding
99	NC_017476	AGG	2	6	56129	56134	33.33 %	0 %	66.67 %	0 %	Non-Coding
100	NC_017476	AGG	2	6	56310	56315	33.33 %	0 %	66.67 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.