MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Lactobacillus casei LC2W plasmid pLC2W

Total Repeats: 86

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017475	GAA	2	6	19	24	66.67 %	0 %	33.33 %	0 %	Non-Coding
2	NC_017475	AGA	2	6	115	120	66.67 %	0 %	33.33 %	0 %	Non-Coding
3	NC_017475	CGT	2	6	590	595	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
4	NC_017475	TAC	2	6	637	642	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
5	NC_017475	CGT	2	6	812	817	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
6	NC_017475	TGA	2	6	1946	1951	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
7	NC_017475	AGG	2	6	2940	2945	33.33 %	0 %	66.67 %	0 %	Non-Coding
8	NC_017475	AGG	2	6	4699	4704	33.33 %	0 %	66.67 %	0 %	Non-Coding
9	NC_017475	TTA	2	6	4705	4710	33.33 %	66.67 %	0 %	0 %	Non-Coding
10	NC_017475	TCA	3	9	6529	6537	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
11	NC_017475	TCC	2	6	6574	6579	0 %	33.33 %	0 %	66.67 %	Non-Coding
12	NC_017475	AAT	2	6	6611	6616	66.67 %	33.33 %	0 %	0 %	Non-Coding
13	NC_017475	ACG	2	6	7531	7536	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
14	NC_017475	GTA	2	6	7706	7711	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
15	NC_017475	ACG	2	6	7753	7758	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
16	NC_017475	TGA	2	6	7947	7952	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
17	NC_017475	TCA	2	6	7978	7983	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
18	NC_017475	TAA	2	6	9713	9718	66.67 %	33.33 %	0 %	0 %	Non-Coding
19	NC_017475	GTT	2	6	10856	10861	0 %	66.67 %	33.33 %	0 %	Non-Coding
20	NC_017475	CAA	2	6	10868	10873	66.67 %	0 %	0 %	33.33 %	Non-Coding
21	NC_017475	TCA	2	6	10899	10904	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
22	NC_017475	TAG	2	6	11012	11017	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
23	NC_017475	TTG	2	6	11099	11104	0 %	66.67 %	33.33 %	0 %	Non-Coding
24	NC_017475	GTT	2	6	11266	11271	0 %	66.67 %	33.33 %	0 %	Non-Coding
25	NC_017475	TAA	2	6	11342	11347	66.67 %	33.33 %	0 %	0 %	Non-Coding
26	NC_017475	CAA	2	6	16190	16195	66.67 %	0 %	0 %	33.33 %	Non-Coding
27	NC_017475	AAT	2	6	16292	16297	66.67 %	33.33 %	0 %	0 %	Non-Coding
28	NC_017475	ATA	2	6	16425	16430	66.67 %	33.33 %	0 %	0 %	Non-Coding
29	NC_017475	CTA	2	6	16661	16666	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
30	NC_017475	GTT	2	6	16667	16672	0 %	66.67 %	33.33 %	0 %	Non-Coding
31	NC_017475	TAG	2	6	16680	16685	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
32	NC_017475	AAC	2	6	16689	16694	66.67 %	0 %	0 %	33.33 %	Non-Coding
33	NC_017475	GAC	2	6	16724	16729	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
34	NC_017475	TCA	2	6	16741	16746	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
35	NC_017475	CGT	2	6	16962	16967	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
36	NC_017475	TAC	2	6	17009	17014	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
37	NC_017475	CGT	2	6	17184	17189	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
38	NC_017475	CCT	2	6	19999	20004	0 %	33.33 %	0 %	66.67 %	Non-Coding
39	NC_017475	CAT	2	6	20159	20164	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
40	NC_017475	CCT	2	6	20180	20185	0 %	33.33 %	0 %	66.67 %	Non-Coding
41	NC_017475	CTT	2	6	20195	20200	0 %	66.67 %	0 %	33.33 %	Non-Coding
42	NC_017475	ACT	2	6	21160	21165	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
43	NC_017475	ATG	2	6	21187	21192	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
44	NC_017475	TAA	2	6	21243	21248	66.67 %	33.33 %	0 %	0 %	Non-Coding
45	NC_017475	GAC	2	6	21345	21350	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
46	NC_017475	ACC	2	6	21368	21373	33.33 %	0 %	0 %	66.67 %	Non-Coding
47	NC_017475	GCA	2	6	21430	21435	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
48	NC_017475	TGG	2	6	21489	21494	0 %	33.33 %	66.67 %	0 %	Non-Coding
49	NC_017475	CAT	2	6	21655	21660	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
50	NC_017475	AAC	2	6	21914	21919	66.67 %	0 %	0 %	33.33 %	Non-Coding
51	NC_017475	CAG	2	6	21934	21939	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
52	NC_017475	CTG	2	6	21975	21980	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
53	NC_017475	GCT	2	6	22010	22015	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
54	NC_017475	AAC	2	6	24251	24256	66.67 %	0 %	0 %	33.33 %	Non-Coding
55	NC_017475	ATA	2	6	24303	24308	66.67 %	33.33 %	0 %	0 %	Non-Coding
56	NC_017475	ATA	2	6	27845	27850	66.67 %	33.33 %	0 %	0 %	Non-Coding
57	NC_017475	CCT	2	6	27855	27860	0 %	33.33 %	0 %	66.67 %	Non-Coding
58	NC_017475	TTA	2	6	27876	27881	33.33 %	66.67 %	0 %	0 %	Non-Coding
59	NC_017475	ACA	2	6	27955	27960	66.67 %	0 %	0 %	33.33 %	Non-Coding
60	NC_017475	GAG	2	6	28026	28031	33.33 %	0 %	66.67 %	0 %	Non-Coding
61	NC_017475	TTC	2	6	28367	28372	0 %	66.67 %	0 %	33.33 %	Non-Coding
62	NC_017475	TGT	2	6	28424	28429	0 %	66.67 %	33.33 %	0 %	Non-Coding
63	NC_017475	CTG	2	6	28454	28459	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
64	NC_017475	GAG	2	6	28488	28493	33.33 %	0 %	66.67 %	0 %	Non-Coding
65	NC_017475	GAC	2	6	28557	28562	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
66	NC_017475	ATC	2	6	29852	29857	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
67	NC_017475	TAT	2	6	29897	29902	33.33 %	66.67 %	0 %	0 %	Non-Coding
68	NC_017475	ATA	2	6	30036	30041	66.67 %	33.33 %	0 %	0 %	Non-Coding
69	NC_017475	TTG	2	6	30061	30066	0 %	66.67 %	33.33 %	0 %	Non-Coding
70	NC_017475	TTA	2	6	35058	35063	33.33 %	66.67 %	0 %	0 %	Non-Coding
71	NC_017475	GAC	2	6	35083	35088	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
72	NC_017475	CAC	2	6	35608	35613	33.33 %	0 %	0 %	66.67 %	Non-Coding
73	NC_017475	TAT	2	6	35659	35664	33.33 %	66.67 %	0 %	0 %	Non-Coding
74	NC_017475	ACG	2	6	35691	35696	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
75	NC_017475	CTT	2	6	36979	36984	0 %	66.67 %	0 %	33.33 %	Non-Coding
76	NC_017475	AGG	2	6	37049	37054	33.33 %	0 %	66.67 %	0 %	Non-Coding
77	NC_017475	TGA	2	6	37657	37662	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
78	NC_017475	TAT	2	6	37852	37857	33.33 %	66.67 %	0 %	0 %	Non-Coding
79	NC_017475	ATG	2	6	37963	37968	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
80	NC_017475	TAA	2	6	37976	37981	66.67 %	33.33 %	0 %	0 %	Non-Coding
81	NC_017475	TGA	4	12	38054	38065	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
82	NC_017475	AGT	2	6	38066	38071	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
83	NC_017475	ATC	2	6	38121	38126	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
84	NC_017475	ATT	2	6	38223	38228	33.33 %	66.67 %	0 %	0 %	Non-Coding
85	NC_017475	AAG	2	6	38254	38259	66.67 %	0 %	33.33 %	0 %	Non-Coding
86	NC_017475	CAA	3	9	38283	38291	66.67 %	0 %	0 %	33.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.