MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydophila psittaci C19/98 chromosome

Total Repeats: 46

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017291	ATTTAA	2	12	33598	33609	50 %	50 %	0 %	0 %	Non-Coding
2	NC_017291	TTTTAA	2	12	42721	42732	33.33 %	66.67 %	0 %	0 %	Non-Coding
3	NC_017291	ATTATA	2	12	77761	77772	50 %	50 %	0 %	0 %	Non-Coding
4	NC_017291	TTTCTT	2	12	123039	123050	0 %	83.33 %	0 %	16.67 %	Non-Coding
5	NC_017291	TTCCGT	2	12	148028	148039	0 %	50 %	16.67 %	33.33 %	Non-Coding
6	NC_017291	AGAAAA	2	12	163063	163074	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_017291	TAAAGA	2	12	226841	226852	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
8	NC_017291	ATTATA	2	12	239710	239721	50 %	50 %	0 %	0 %	Non-Coding
9	NC_017291	TTGAAT	2	12	244023	244034	33.33 %	50 %	16.67 %	0 %	Non-Coding
10	NC_017291	ATATAA	2	12	261775	261786	66.67 %	33.33 %	0 %	0 %	Non-Coding
11	NC_017291	GGGAAA	2	12	267742	267753	50 %	0 %	50 %	0 %	Non-Coding
12	NC_017291	TAAGAA	2	12	277661	277672	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
13	NC_017291	TAAAAT	2	12	291669	291680	66.67 %	33.33 %	0 %	0 %	Non-Coding
14	NC_017291	TGAAAA	2	12	334381	334392	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
15	NC_017291	ATTTTT	2	12	368769	368780	16.67 %	83.33 %	0 %	0 %	Non-Coding
16	NC_017291	AAAATC	2	12	393777	393788	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
17	NC_017291	AAAAAT	2	12	467628	467639	83.33 %	16.67 %	0 %	0 %	Non-Coding
18	NC_017291	TATAAT	2	12	487083	487094	50 %	50 %	0 %	0 %	Non-Coding
19	NC_017291	TTAATT	2	12	504779	504790	33.33 %	66.67 %	0 %	0 %	Non-Coding
20	NC_017291	AAATAA	2	12	584605	584616	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_017291	CTTTTG	2	12	653506	653517	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
22	NC_017291	AAATAC	2	12	659064	659075	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
23	NC_017291	CAATCT	2	12	659650	659661	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
24	NC_017291	TCATTC	2	12	661899	661910	16.67 %	50 %	0 %	33.33 %	Non-Coding
25	NC_017291	AAGGGA	2	12	700750	700761	50 %	0 %	50 %	0 %	Non-Coding
26	NC_017291	ATTAAT	2	12	703440	703451	50 %	50 %	0 %	0 %	Non-Coding
27	NC_017291	TAAAAG	2	12	736967	736978	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
28	NC_017291	ATTTTA	2	12	749659	749670	33.33 %	66.67 %	0 %	0 %	Non-Coding
29	NC_017291	TAACCT	2	12	791039	791050	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
30	NC_017291	CTATGT	2	12	811322	811333	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
31	NC_017291	ATTTTA	2	12	948492	948503	33.33 %	66.67 %	0 %	0 %	Non-Coding
32	NC_017291	ATCTAT	2	12	963784	963795	33.33 %	50 %	0 %	16.67 %	Non-Coding
33	NC_017291	ATAAAA	2	12	980232	980243	83.33 %	16.67 %	0 %	0 %	Non-Coding
34	NC_017291	TGAGAA	2	12	993082	993093	50 %	16.67 %	33.33 %	0 %	Non-Coding
35	NC_017291	TTTTCT	2	12	1011188	1011199	0 %	83.33 %	0 %	16.67 %	Non-Coding
36	NC_017291	AAATAA	2	12	1016411	1016422	83.33 %	16.67 %	0 %	0 %	Non-Coding
37	NC_017291	TCGCTT	2	12	1019271	1019282	0 %	50 %	16.67 %	33.33 %	Non-Coding
38	NC_017291	TTATCC	2	12	1020175	1020186	16.67 %	50 %	0 %	33.33 %	Non-Coding
39	NC_017291	AAATTT	2	12	1022316	1022327	50 %	50 %	0 %	0 %	Non-Coding
40	NC_017291	CTTTGT	2	12	1033759	1033770	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
41	NC_017291	AAAAAT	2	12	1054034	1054045	83.33 %	16.67 %	0 %	0 %	Non-Coding
42	NC_017291	TAATTT	2	12	1100666	1100677	33.33 %	66.67 %	0 %	0 %	Non-Coding
43	NC_017291	AAAATA	2	12	1139166	1139177	83.33 %	16.67 %	0 %	0 %	Non-Coding
44	NC_017291	TACAGA	2	12	1151844	1151855	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
45	NC_017291	GTTAAA	2	12	1164771	1164782	50 %	33.33 %	16.67 %	0 %	Non-Coding
46	NC_017291	CCTTCG	2	12	1167560	1167571	0 %	33.33 %	16.67 %	50 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.