MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Clostridium difficile BI1 plasmid pCDBI1

Total Repeats: 103

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017176	TAT	2	6	357	362	33.33 %	66.67 %	0 %	0 %	Non-Coding
2	NC_017176	GAT	2	6	1356	1361	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
3	NC_017176	GTT	2	6	2296	2301	0 %	66.67 %	33.33 %	0 %	Non-Coding
4	NC_017176	TAT	2	6	5637	5642	33.33 %	66.67 %	0 %	0 %	Non-Coding
5	NC_017176	TTA	2	6	6092	6097	33.33 %	66.67 %	0 %	0 %	Non-Coding
6	NC_017176	AGA	2	6	6199	6204	66.67 %	0 %	33.33 %	0 %	Non-Coding
7	NC_017176	GTT	2	6	6226	6231	0 %	66.67 %	33.33 %	0 %	Non-Coding
8	NC_017176	GTA	2	6	9646	9651	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
9	NC_017176	GGA	2	6	10198	10203	33.33 %	0 %	66.67 %	0 %	Non-Coding
10	NC_017176	TGG	2	6	10847	10852	0 %	33.33 %	66.67 %	0 %	Non-Coding
11	NC_017176	AAT	2	6	17838	17843	66.67 %	33.33 %	0 %	0 %	Non-Coding
12	NC_017176	TAA	2	6	17880	17885	66.67 %	33.33 %	0 %	0 %	Non-Coding
13	NC_017176	AGG	2	6	18190	18195	33.33 %	0 %	66.67 %	0 %	Non-Coding
14	NC_017176	TTG	2	6	19472	19477	0 %	66.67 %	33.33 %	0 %	Non-Coding
15	NC_017176	AGG	2	6	19511	19516	33.33 %	0 %	66.67 %	0 %	Non-Coding
16	NC_017176	AAT	2	6	19573	19578	66.67 %	33.33 %	0 %	0 %	Non-Coding
17	NC_017176	AGA	2	6	19588	19593	66.67 %	0 %	33.33 %	0 %	Non-Coding
18	NC_017176	AAT	2	6	19657	19662	66.67 %	33.33 %	0 %	0 %	Non-Coding
19	NC_017176	ATA	2	6	19689	19694	66.67 %	33.33 %	0 %	0 %	Non-Coding
20	NC_017176	TGG	2	6	19708	19713	0 %	33.33 %	66.67 %	0 %	Non-Coding
21	NC_017176	TAC	2	6	19744	19749	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
22	NC_017176	AGA	2	6	19854	19859	66.67 %	0 %	33.33 %	0 %	Non-Coding
23	NC_017176	CAT	2	6	19972	19977	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
24	NC_017176	TAA	2	6	20019	20024	66.67 %	33.33 %	0 %	0 %	Non-Coding
25	NC_017176	TAA	2	6	20037	20042	66.67 %	33.33 %	0 %	0 %	Non-Coding
26	NC_017176	TTG	2	6	20192	20197	0 %	66.67 %	33.33 %	0 %	Non-Coding
27	NC_017176	ATT	2	6	20216	20221	33.33 %	66.67 %	0 %	0 %	Non-Coding
28	NC_017176	TTC	2	6	20222	20227	0 %	66.67 %	0 %	33.33 %	Non-Coding
29	NC_017176	ATA	2	6	20314	20319	66.67 %	33.33 %	0 %	0 %	Non-Coding
30	NC_017176	ATC	2	6	20332	20337	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
31	NC_017176	TAA	2	6	20367	20372	66.67 %	33.33 %	0 %	0 %	Non-Coding
32	NC_017176	TAT	2	6	20439	20444	33.33 %	66.67 %	0 %	0 %	Non-Coding
33	NC_017176	CTA	2	6	20595	20600	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
34	NC_017176	TAT	2	6	20601	20606	33.33 %	66.67 %	0 %	0 %	Non-Coding
35	NC_017176	CCT	2	6	21497	21502	0 %	33.33 %	0 %	66.67 %	Non-Coding
36	NC_017176	TAT	2	6	21542	21547	33.33 %	66.67 %	0 %	0 %	Non-Coding
37	NC_017176	TTA	2	6	22735	22740	33.33 %	66.67 %	0 %	0 %	Non-Coding
38	NC_017176	ATA	2	6	22803	22808	66.67 %	33.33 %	0 %	0 %	Non-Coding
39	NC_017176	ATT	2	6	23411	23416	33.33 %	66.67 %	0 %	0 %	Non-Coding
40	NC_017176	ATA	2	6	23761	23766	66.67 %	33.33 %	0 %	0 %	Non-Coding
41	NC_017176	CTT	3	9	23771	23779	0 %	66.67 %	0 %	33.33 %	Non-Coding
42	NC_017176	AAT	2	6	23838	23843	66.67 %	33.33 %	0 %	0 %	Non-Coding
43	NC_017176	ATT	2	6	23962	23967	33.33 %	66.67 %	0 %	0 %	Non-Coding
44	NC_017176	TAA	3	9	23999	24007	66.67 %	33.33 %	0 %	0 %	Non-Coding
45	NC_017176	ATA	2	6	24048	24053	66.67 %	33.33 %	0 %	0 %	Non-Coding
46	NC_017176	AAG	2	6	24059	24064	66.67 %	0 %	33.33 %	0 %	Non-Coding
47	NC_017176	ATA	2	6	24098	24103	66.67 %	33.33 %	0 %	0 %	Non-Coding
48	NC_017176	GGA	2	6	24291	24296	33.33 %	0 %	66.67 %	0 %	Non-Coding
49	NC_017176	CTT	2	6	24343	24348	0 %	66.67 %	0 %	33.33 %	Non-Coding
50	NC_017176	ATG	2	6	27230	27235	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
51	NC_017176	ATG	2	6	27252	27257	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
52	NC_017176	ATG	2	6	27274	27279	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
53	NC_017176	ATG	2	6	27296	27301	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
54	NC_017176	ATG	2	6	27318	27323	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
55	NC_017176	ATG	2	6	27340	27345	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
56	NC_017176	ATT	2	6	27376	27381	33.33 %	66.67 %	0 %	0 %	Non-Coding
57	NC_017176	AAT	2	6	27525	27530	66.67 %	33.33 %	0 %	0 %	Non-Coding
58	NC_017176	GAA	2	6	27552	27557	66.67 %	0 %	33.33 %	0 %	Non-Coding
59	NC_017176	TAC	2	6	28787	28792	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
60	NC_017176	TAT	2	6	28930	28935	33.33 %	66.67 %	0 %	0 %	Non-Coding
61	NC_017176	ACA	2	6	29033	29038	66.67 %	0 %	0 %	33.33 %	Non-Coding
62	NC_017176	TAA	2	6	29057	29062	66.67 %	33.33 %	0 %	0 %	Non-Coding
63	NC_017176	TCA	2	6	29127	29132	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
64	NC_017176	TAT	2	6	29756	29761	33.33 %	66.67 %	0 %	0 %	Non-Coding
65	NC_017176	AGA	2	6	29867	29872	66.67 %	0 %	33.33 %	0 %	Non-Coding
66	NC_017176	AAT	2	6	29932	29937	66.67 %	33.33 %	0 %	0 %	Non-Coding
67	NC_017176	TAG	2	6	30023	30028	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
68	NC_017176	ATG	2	6	30180	30185	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
69	NC_017176	TAA	2	6	30754	30759	66.67 %	33.33 %	0 %	0 %	Non-Coding
70	NC_017176	AAT	3	9	30781	30789	66.67 %	33.33 %	0 %	0 %	Non-Coding
71	NC_017176	TTC	2	6	30856	30861	0 %	66.67 %	0 %	33.33 %	Non-Coding
72	NC_017176	AAT	2	6	30935	30940	66.67 %	33.33 %	0 %	0 %	Non-Coding
73	NC_017176	AGG	2	6	31216	31221	33.33 %	0 %	66.67 %	0 %	Non-Coding
74	NC_017176	TGA	2	6	31222	31227	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
75	NC_017176	AGG	2	6	31975	31980	33.33 %	0 %	66.67 %	0 %	Non-Coding
76	NC_017176	AGG	2	6	32188	32193	33.33 %	0 %	66.67 %	0 %	Non-Coding
77	NC_017176	TCA	2	6	32646	32651	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
78	NC_017176	AGG	2	6	32767	32772	33.33 %	0 %	66.67 %	0 %	Non-Coding
79	NC_017176	TTA	2	6	34477	34482	33.33 %	66.67 %	0 %	0 %	Non-Coding
80	NC_017176	AAT	2	6	34514	34519	66.67 %	33.33 %	0 %	0 %	Non-Coding
81	NC_017176	AGT	2	6	34694	34699	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
82	NC_017176	TTA	2	6	34746	34751	33.33 %	66.67 %	0 %	0 %	Non-Coding
83	NC_017176	ATT	2	6	34795	34800	33.33 %	66.67 %	0 %	0 %	Non-Coding
84	NC_017176	TTA	2	6	35986	35991	33.33 %	66.67 %	0 %	0 %	Non-Coding
85	NC_017176	AGG	2	6	36012	36017	33.33 %	0 %	66.67 %	0 %	Non-Coding
86	NC_017176	TGG	2	6	37189	37194	0 %	33.33 %	66.67 %	0 %	Non-Coding
87	NC_017176	ATA	2	6	37663	37668	66.67 %	33.33 %	0 %	0 %	Non-Coding
88	NC_017176	ATA	2	6	38229	38234	66.67 %	33.33 %	0 %	0 %	Non-Coding
89	NC_017176	TCA	2	6	38563	38568	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
90	NC_017176	CAT	2	6	38572	38577	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
91	NC_017176	TAA	2	6	39182	39187	66.67 %	33.33 %	0 %	0 %	Non-Coding
92	NC_017176	CAA	2	6	40427	40432	66.67 %	0 %	0 %	33.33 %	Non-Coding
93	NC_017176	ATT	2	6	40439	40444	33.33 %	66.67 %	0 %	0 %	Non-Coding
94	NC_017176	AAT	2	6	40462	40467	66.67 %	33.33 %	0 %	0 %	Non-Coding
95	NC_017176	TTA	2	6	40493	40498	33.33 %	66.67 %	0 %	0 %	Non-Coding
96	NC_017176	TAA	2	6	41146	41151	66.67 %	33.33 %	0 %	0 %	Non-Coding
97	NC_017176	TAA	2	6	41192	41197	66.67 %	33.33 %	0 %	0 %	Non-Coding
98	NC_017176	TAA	2	6	41212	41217	66.67 %	33.33 %	0 %	0 %	Non-Coding
99	NC_017176	ATT	2	6	41247	41252	33.33 %	66.67 %	0 %	0 %	Non-Coding
100	NC_017176	AAT	2	6	41373	41378	66.67 %	33.33 %	0 %	0 %	Non-Coding
101	NC_017176	TTA	2	6	41522	41527	33.33 %	66.67 %	0 %	0 %	Non-Coding
102	NC_017176	AGA	2	6	41586	41591	66.67 %	0 %	33.33 %	0 %	Non-Coding
103	NC_017176	GTT	2	6	43562	43567	0 %	66.67 %	33.33 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.