MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Rickettsia rhipicephali str. 3-7-female6-CWPP plasmid pMCC_1

Total Repeats: 90

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017055	TAA	2	6	16	21	66.67 %	33.33 %	0 %	0 %	Non-Coding
2	NC_017055	ACA	2	6	60	65	66.67 %	0 %	0 %	33.33 %	Non-Coding
3	NC_017055	TAA	2	6	151	156	66.67 %	33.33 %	0 %	0 %	Non-Coding
4	NC_017055	CTT	2	6	174	179	0 %	66.67 %	0 %	33.33 %	Non-Coding
5	NC_017055	AGA	2	6	244	249	66.67 %	0 %	33.33 %	0 %	Non-Coding
6	NC_017055	TAA	2	6	250	255	66.67 %	33.33 %	0 %	0 %	Non-Coding
7	NC_017055	TTA	2	6	258	263	33.33 %	66.67 %	0 %	0 %	Non-Coding
8	NC_017055	ATG	2	6	291	296	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
9	NC_017055	TCT	2	6	337	342	0 %	66.67 %	0 %	33.33 %	Non-Coding
10	NC_017055	TAA	2	6	354	359	66.67 %	33.33 %	0 %	0 %	Non-Coding
11	NC_017055	CAA	2	6	395	400	66.67 %	0 %	0 %	33.33 %	Non-Coding
12	NC_017055	TAA	2	6	415	420	66.67 %	33.33 %	0 %	0 %	Non-Coding
13	NC_017055	CCT	2	6	470	475	0 %	33.33 %	0 %	66.67 %	Non-Coding
14	NC_017055	TAT	2	6	526	531	33.33 %	66.67 %	0 %	0 %	Non-Coding
15	NC_017055	TTC	2	6	583	588	0 %	66.67 %	0 %	33.33 %	Non-Coding
16	NC_017055	GAA	2	6	605	610	66.67 %	0 %	33.33 %	0 %	Non-Coding
17	NC_017055	TTC	2	6	673	678	0 %	66.67 %	0 %	33.33 %	Non-Coding
18	NC_017055	GTT	2	6	702	707	0 %	66.67 %	33.33 %	0 %	Non-Coding
19	NC_017055	TTG	2	6	777	782	0 %	66.67 %	33.33 %	0 %	Non-Coding
20	NC_017055	CTT	2	6	964	969	0 %	66.67 %	0 %	33.33 %	Non-Coding
21	NC_017055	ACA	2	6	1028	1033	66.67 %	0 %	0 %	33.33 %	Non-Coding
22	NC_017055	AGA	3	9	1143	1151	66.67 %	0 %	33.33 %	0 %	Non-Coding
23	NC_017055	CAA	2	6	1219	1224	66.67 %	0 %	0 %	33.33 %	Non-Coding
24	NC_017055	AGC	2	6	1293	1298	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
25	NC_017055	TTA	2	6	1324	1329	33.33 %	66.67 %	0 %	0 %	Non-Coding
26	NC_017055	AGG	2	6	1335	1340	33.33 %	0 %	66.67 %	0 %	Non-Coding
27	NC_017055	AGA	2	6	1342	1347	66.67 %	0 %	33.33 %	0 %	Non-Coding
28	NC_017055	GGA	2	6	1351	1356	33.33 %	0 %	66.67 %	0 %	Non-Coding
29	NC_017055	GAA	2	6	1385	1390	66.67 %	0 %	33.33 %	0 %	Non-Coding
30	NC_017055	GGA	2	6	1469	1474	33.33 %	0 %	66.67 %	0 %	Non-Coding
31	NC_017055	GAA	2	6	1565	1570	66.67 %	0 %	33.33 %	0 %	Non-Coding
32	NC_017055	GTA	2	6	1571	1576	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
33	NC_017055	CAA	2	6	1620	1625	66.67 %	0 %	0 %	33.33 %	Non-Coding
34	NC_017055	TAA	2	6	1648	1653	66.67 %	33.33 %	0 %	0 %	Non-Coding
35	NC_017055	TCC	2	6	1780	1785	0 %	33.33 %	0 %	66.67 %	Non-Coding
36	NC_017055	AAG	2	6	1800	1805	66.67 %	0 %	33.33 %	0 %	Non-Coding
37	NC_017055	TAA	2	6	1818	1823	66.67 %	33.33 %	0 %	0 %	Non-Coding
38	NC_017055	AGT	2	6	1899	1904	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
39	NC_017055	ATC	2	6	1943	1948	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
40	NC_017055	GAT	2	6	1982	1987	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
41	NC_017055	TCA	2	6	2095	2100	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
42	NC_017055	ATA	2	6	2104	2109	66.67 %	33.33 %	0 %	0 %	Non-Coding
43	NC_017055	GAA	2	6	2122	2127	66.67 %	0 %	33.33 %	0 %	Non-Coding
44	NC_017055	CAT	2	6	2138	2143	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
45	NC_017055	ACA	2	6	5375	5380	66.67 %	0 %	0 %	33.33 %	Non-Coding
46	NC_017055	AGG	2	6	5391	5396	33.33 %	0 %	66.67 %	0 %	Non-Coding
47	NC_017055	AGT	2	6	5422	5427	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
48	NC_017055	TAA	2	6	5449	5454	66.67 %	33.33 %	0 %	0 %	Non-Coding
49	NC_017055	TAC	2	6	5600	5605	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
50	NC_017055	ATC	2	6	5854	5859	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
51	NC_017055	TAA	2	6	6055	6060	66.67 %	33.33 %	0 %	0 %	Non-Coding
52	NC_017055	CTT	2	6	6121	6126	0 %	66.67 %	0 %	33.33 %	Non-Coding
53	NC_017055	TGT	2	6	6374	6379	0 %	66.67 %	33.33 %	0 %	Non-Coding
54	NC_017055	TTA	2	6	6401	6406	33.33 %	66.67 %	0 %	0 %	Non-Coding
55	NC_017055	AGA	2	6	7216	7221	66.67 %	0 %	33.33 %	0 %	Non-Coding
56	NC_017055	GCA	2	6	8754	8759	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
57	NC_017055	ACT	2	6	8760	8765	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
58	NC_017055	TAT	2	6	8813	8818	33.33 %	66.67 %	0 %	0 %	Non-Coding
59	NC_017055	AGA	2	6	8949	8954	66.67 %	0 %	33.33 %	0 %	Non-Coding
60	NC_017055	ATA	2	6	9027	9032	66.67 %	33.33 %	0 %	0 %	Non-Coding
61	NC_017055	AAC	2	6	9191	9196	66.67 %	0 %	0 %	33.33 %	Non-Coding
62	NC_017055	ATA	2	6	9715	9720	66.67 %	33.33 %	0 %	0 %	Non-Coding
63	NC_017055	ATA	2	6	9816	9821	66.67 %	33.33 %	0 %	0 %	Non-Coding
64	NC_017055	GGC	2	6	9845	9850	0 %	0 %	66.67 %	33.33 %	Non-Coding
65	NC_017055	TTA	2	6	9866	9871	33.33 %	66.67 %	0 %	0 %	Non-Coding
66	NC_017055	AGT	2	6	9944	9949	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
67	NC_017055	TTA	2	6	10030	10035	33.33 %	66.67 %	0 %	0 %	Non-Coding
68	NC_017055	TTA	2	6	11412	11417	33.33 %	66.67 %	0 %	0 %	Non-Coding
69	NC_017055	CAT	2	6	11471	11476	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
70	NC_017055	TAG	2	6	11831	11836	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
71	NC_017055	TAT	2	6	11839	11844	33.33 %	66.67 %	0 %	0 %	Non-Coding
72	NC_017055	ATG	2	6	12008	12013	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
73	NC_017055	CTA	2	6	12112	12117	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
74	NC_017055	TAT	2	6	12260	12265	33.33 %	66.67 %	0 %	0 %	Non-Coding
75	NC_017055	TAC	2	6	12899	12904	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
76	NC_017055	TAA	2	6	12984	12989	66.67 %	33.33 %	0 %	0 %	Non-Coding
77	NC_017055	ATT	2	6	13921	13926	33.33 %	66.67 %	0 %	0 %	Non-Coding
78	NC_017055	ATA	2	6	13940	13945	66.67 %	33.33 %	0 %	0 %	Non-Coding
79	NC_017055	ATT	2	6	14033	14038	33.33 %	66.67 %	0 %	0 %	Non-Coding
80	NC_017055	ATT	2	6	14055	14060	33.33 %	66.67 %	0 %	0 %	Non-Coding
81	NC_017055	GCA	2	6	14379	14384	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
82	NC_017055	ATA	2	6	14397	14402	66.67 %	33.33 %	0 %	0 %	Non-Coding
83	NC_017055	ACC	2	6	14519	14524	33.33 %	0 %	0 %	66.67 %	Non-Coding
84	NC_017055	TAT	2	6	14559	14564	33.33 %	66.67 %	0 %	0 %	Non-Coding
85	NC_017055	TAC	2	6	14609	14614	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
86	NC_017055	ATT	2	6	14765	14770	33.33 %	66.67 %	0 %	0 %	Non-Coding
87	NC_017055	ATT	2	6	14810	14815	33.33 %	66.67 %	0 %	0 %	Non-Coding
88	NC_017055	CAA	2	6	14820	14825	66.67 %	0 %	0 %	33.33 %	Non-Coding
89	NC_017055	ATA	2	6	14889	14894	66.67 %	33.33 %	0 %	0 %	Non-Coding
90	NC_017055	ATA	2	6	14937	14942	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.