MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Rickettsia australis str. Cutlack plasmid pMC5_1

Total Repeats: 130

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017041	TGA	2	6	223	228	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
2	NC_017041	TTC	2	6	266	271	0 %	66.67 %	0 %	33.33 %	Non-Coding
3	NC_017041	AGA	2	6	427	432	66.67 %	0 %	33.33 %	0 %	Non-Coding
4	NC_017041	AAT	2	6	452	457	66.67 %	33.33 %	0 %	0 %	Non-Coding
5	NC_017041	TCA	2	6	490	495	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
6	NC_017041	AAC	2	6	501	506	66.67 %	0 %	0 %	33.33 %	Non-Coding
7	NC_017041	GTT	2	6	1242	1247	0 %	66.67 %	33.33 %	0 %	Non-Coding
8	NC_017041	ACT	2	6	1252	1257	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
9	NC_017041	TGC	2	6	1280	1285	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
10	NC_017041	TAA	2	6	1371	1376	66.67 %	33.33 %	0 %	0 %	Non-Coding
11	NC_017041	CTA	2	6	6091	6096	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
12	NC_017041	CAA	2	6	6101	6106	66.67 %	0 %	0 %	33.33 %	Non-Coding
13	NC_017041	ACT	2	6	7012	7017	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
14	NC_017041	TGA	2	6	7362	7367	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
15	NC_017041	TAT	2	6	7370	7375	33.33 %	66.67 %	0 %	0 %	Non-Coding
16	NC_017041	GTT	2	6	7406	7411	0 %	66.67 %	33.33 %	0 %	Non-Coding
17	NC_017041	TAT	2	6	7538	7543	33.33 %	66.67 %	0 %	0 %	Non-Coding
18	NC_017041	TAA	2	6	8554	8559	66.67 %	33.33 %	0 %	0 %	Non-Coding
19	NC_017041	ATT	2	6	8623	8628	33.33 %	66.67 %	0 %	0 %	Non-Coding
20	NC_017041	TAA	2	6	8637	8642	66.67 %	33.33 %	0 %	0 %	Non-Coding
21	NC_017041	AGA	2	6	8896	8901	66.67 %	0 %	33.33 %	0 %	Non-Coding
22	NC_017041	CTA	2	6	8912	8917	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
23	NC_017041	AGT	2	6	11472	11477	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
24	NC_017041	AGT	2	6	11480	11485	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
25	NC_017041	TTA	2	6	11488	11493	33.33 %	66.67 %	0 %	0 %	Non-Coding
26	NC_017041	ATT	2	6	11588	11593	33.33 %	66.67 %	0 %	0 %	Non-Coding
27	NC_017041	ATA	2	6	11729	11734	66.67 %	33.33 %	0 %	0 %	Non-Coding
28	NC_017041	ACA	2	6	11808	11813	66.67 %	0 %	0 %	33.33 %	Non-Coding
29	NC_017041	TAC	2	6	11860	11865	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
30	NC_017041	ATA	2	6	11871	11876	66.67 %	33.33 %	0 %	0 %	Non-Coding
31	NC_017041	ATT	2	6	12000	12005	33.33 %	66.67 %	0 %	0 %	Non-Coding
32	NC_017041	ATC	2	6	12010	12015	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
33	NC_017041	GCA	2	6	12127	12132	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
34	NC_017041	CAT	2	6	12148	12153	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
35	NC_017041	ATC	2	6	12221	12226	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
36	NC_017041	GAT	2	6	12247	12252	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
37	NC_017041	ATG	2	6	12325	12330	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
38	NC_017041	GCA	2	6	12378	12383	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
39	NC_017041	TAA	2	6	12407	12412	66.67 %	33.33 %	0 %	0 %	Non-Coding
40	NC_017041	TAG	2	6	12527	12532	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
41	NC_017041	ATA	2	6	12556	12561	66.67 %	33.33 %	0 %	0 %	Non-Coding
42	NC_017041	TAT	2	6	12568	12573	33.33 %	66.67 %	0 %	0 %	Non-Coding
43	NC_017041	AGT	2	6	12603	12608	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
44	NC_017041	CAG	2	6	12703	12708	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
45	NC_017041	AGT	2	6	12777	12782	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
46	NC_017041	TAG	2	6	12787	12792	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
47	NC_017041	TTA	2	6	12915	12920	33.33 %	66.67 %	0 %	0 %	Non-Coding
48	NC_017041	AAG	2	6	12981	12986	66.67 %	0 %	33.33 %	0 %	Non-Coding
49	NC_017041	GAA	2	6	13022	13027	66.67 %	0 %	33.33 %	0 %	Non-Coding
50	NC_017041	AGC	2	6	13218	13223	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
51	NC_017041	GCT	2	6	13259	13264	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
52	NC_017041	TGT	2	6	13350	13355	0 %	66.67 %	33.33 %	0 %	Non-Coding
53	NC_017041	GTG	2	6	13439	13444	0 %	33.33 %	66.67 %	0 %	Non-Coding
54	NC_017041	TAA	2	6	13455	13460	66.67 %	33.33 %	0 %	0 %	Non-Coding
55	NC_017041	AAG	2	6	13542	13547	66.67 %	0 %	33.33 %	0 %	Non-Coding
56	NC_017041	ATG	2	6	13587	13592	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
57	NC_017041	TCA	2	6	13610	13615	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
58	NC_017041	TAA	2	6	13648	13653	66.67 %	33.33 %	0 %	0 %	Non-Coding
59	NC_017041	TAT	2	6	13744	13749	33.33 %	66.67 %	0 %	0 %	Non-Coding
60	NC_017041	GTA	2	6	13758	13763	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
61	NC_017041	ATC	2	6	13770	13775	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
62	NC_017041	GAT	2	6	13827	13832	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
63	NC_017041	GTG	2	6	13866	13871	0 %	33.33 %	66.67 %	0 %	Non-Coding
64	NC_017041	CAT	2	6	13911	13916	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
65	NC_017041	ATT	3	9	13945	13953	33.33 %	66.67 %	0 %	0 %	Non-Coding
66	NC_017041	CAA	2	6	13974	13979	66.67 %	0 %	0 %	33.33 %	Non-Coding
67	NC_017041	AGA	2	6	13990	13995	66.67 %	0 %	33.33 %	0 %	Non-Coding
68	NC_017041	TAA	2	6	14011	14016	66.67 %	33.33 %	0 %	0 %	Non-Coding
69	NC_017041	TGC	2	6	16011	16016	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
70	NC_017041	GAT	2	6	16071	16076	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
71	NC_017041	AAT	2	6	16158	16163	66.67 %	33.33 %	0 %	0 %	Non-Coding
72	NC_017041	TAT	2	6	16176	16181	33.33 %	66.67 %	0 %	0 %	Non-Coding
73	NC_017041	ATT	2	6	16217	16222	33.33 %	66.67 %	0 %	0 %	Non-Coding
74	NC_017041	CAT	2	6	16277	16282	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
75	NC_017041	CTG	2	6	16312	16317	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
76	NC_017041	TTG	2	6	16345	16350	0 %	66.67 %	33.33 %	0 %	Non-Coding
77	NC_017041	ACA	2	6	16394	16399	66.67 %	0 %	0 %	33.33 %	Non-Coding
78	NC_017041	TAA	2	6	16757	16762	66.67 %	33.33 %	0 %	0 %	Non-Coding
79	NC_017041	TCT	2	6	16765	16770	0 %	66.67 %	0 %	33.33 %	Non-Coding
80	NC_017041	AAT	2	6	16842	16847	66.67 %	33.33 %	0 %	0 %	Non-Coding
81	NC_017041	GCT	2	6	17007	17012	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
82	NC_017041	TAA	2	6	17290	17295	66.67 %	33.33 %	0 %	0 %	Non-Coding
83	NC_017041	ATT	2	6	17335	17340	33.33 %	66.67 %	0 %	0 %	Non-Coding
84	NC_017041	CTT	2	6	17357	17362	0 %	66.67 %	0 %	33.33 %	Non-Coding
85	NC_017041	TAT	2	6	17364	17369	33.33 %	66.67 %	0 %	0 %	Non-Coding
86	NC_017041	GTA	2	6	17420	17425	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
87	NC_017041	CTG	2	6	17545	17550	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
88	NC_017041	TTA	2	6	18153	18158	33.33 %	66.67 %	0 %	0 %	Non-Coding
89	NC_017041	AGG	2	6	18166	18171	33.33 %	0 %	66.67 %	0 %	Non-Coding
90	NC_017041	ATG	2	6	18701	18706	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
91	NC_017041	AAT	2	6	18745	18750	66.67 %	33.33 %	0 %	0 %	Non-Coding
92	NC_017041	ACC	2	6	18774	18779	33.33 %	0 %	0 %	66.67 %	Non-Coding
93	NC_017041	ATT	2	6	18821	18826	33.33 %	66.67 %	0 %	0 %	Non-Coding
94	NC_017041	ATA	2	6	19472	19477	66.67 %	33.33 %	0 %	0 %	Non-Coding
95	NC_017041	TAG	2	6	19571	19576	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
96	NC_017041	ATA	2	6	19604	19609	66.67 %	33.33 %	0 %	0 %	Non-Coding
97	NC_017041	ATG	2	6	19614	19619	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
98	NC_017041	ATA	2	6	19717	19722	66.67 %	33.33 %	0 %	0 %	Non-Coding
99	NC_017041	GTG	2	6	24212	24217	0 %	33.33 %	66.67 %	0 %	Non-Coding
100	NC_017041	CTA	2	6	24274	24279	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
101	NC_017041	GCA	2	6	24283	24288	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
102	NC_017041	AGT	2	6	24749	24754	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
103	NC_017041	ACA	2	6	24776	24781	66.67 %	0 %	0 %	33.33 %	Non-Coding
104	NC_017041	AGA	2	6	24911	24916	66.67 %	0 %	33.33 %	0 %	Non-Coding
105	NC_017041	AAT	2	6	24921	24926	66.67 %	33.33 %	0 %	0 %	Non-Coding
106	NC_017041	AGG	2	6	24956	24961	33.33 %	0 %	66.67 %	0 %	Non-Coding
107	NC_017041	ATT	2	6	24973	24978	33.33 %	66.67 %	0 %	0 %	Non-Coding
108	NC_017041	AGT	2	6	25104	25109	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
109	NC_017041	ACT	2	6	25116	25121	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
110	NC_017041	GAT	2	6	25158	25163	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
111	NC_017041	GAA	2	6	25181	25186	66.67 %	0 %	33.33 %	0 %	Non-Coding
112	NC_017041	CAG	2	6	25207	25212	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
113	NC_017041	ATT	2	6	25234	25239	33.33 %	66.67 %	0 %	0 %	Non-Coding
114	NC_017041	CCA	2	6	25367	25372	33.33 %	0 %	0 %	66.67 %	Non-Coding
115	NC_017041	ATA	2	6	25417	25422	66.67 %	33.33 %	0 %	0 %	Non-Coding
116	NC_017041	TGC	2	6	25436	25441	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
117	NC_017041	GAA	2	6	25473	25478	66.67 %	0 %	33.33 %	0 %	Non-Coding
118	NC_017041	ACA	2	6	25581	25586	66.67 %	0 %	0 %	33.33 %	Non-Coding
119	NC_017041	GTA	2	6	25664	25669	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
120	NC_017041	TCA	2	6	25712	25717	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
121	NC_017041	CAG	2	6	25743	25748	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
122	NC_017041	TAT	2	6	25864	25869	33.33 %	66.67 %	0 %	0 %	Non-Coding
123	NC_017041	ATA	2	6	25924	25929	66.67 %	33.33 %	0 %	0 %	Non-Coding
124	NC_017041	CAT	2	6	26055	26060	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
125	NC_017041	AGC	2	6	26074	26079	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
126	NC_017041	GAT	2	6	26085	26090	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
127	NC_017041	ATA	2	6	26158	26163	66.67 %	33.33 %	0 %	0 %	Non-Coding
128	NC_017041	ATG	2	6	26370	26375	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
129	NC_017041	TTG	2	6	26496	26501	0 %	66.67 %	33.33 %	0 %	Non-Coding
130	NC_017041	GAT	2	6	26555	26560	33.33 %	33.33 %	33.33 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.