MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Treponema pallidum subsp. pertenue str. Gauthier chromosome

Total Repeats: 27

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_016843	CCTCCC	2	12	49436	49447	0 %	16.67 %	0 %	83.33 %	Non-Coding
2	NC_016843	GCACGA	2	12	59446	59457	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
3	NC_016843	TCTCAA	2	12	125119	125130	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
4	NC_016843	GGCTGG	2	12	150592	150603	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
5	NC_016843	TCGGGC	2	12	150607	150618	0 %	16.67 %	50 %	33.33 %	Non-Coding
6	NC_016843	CTGCGG	4	24	151784	151807	0 %	16.67 %	50 %	33.33 %	Non-Coding
7	NC_016843	CGGCTC	2	12	152289	152300	0 %	16.67 %	33.33 %	50 %	Non-Coding
8	NC_016843	GTGCGA	2	12	234607	234618	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
9	NC_016843	TCCTTC	2	12	235988	235999	0 %	50 %	0 %	50 %	Non-Coding
10	NC_016843	GTGCGA	2	12	283001	283012	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
11	NC_016843	TCCTTC	2	12	284382	284393	0 %	50 %	0 %	50 %	Non-Coding
12	NC_016843	AATATA	2	12	355620	355631	66.67 %	33.33 %	0 %	0 %	Non-Coding
13	NC_016843	TTTCCG	2	12	372883	372894	0 %	50 %	16.67 %	33.33 %	Non-Coding
14	NC_016843	CGTGCG	3	18	525811	525828	0 %	16.67 %	50 %	33.33 %	Non-Coding
15	NC_016843	TAACCC	2	12	562724	562735	33.33 %	16.67 %	0 %	50 %	Non-Coding
16	NC_016843	ATACTG	2	12	562818	562829	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
17	NC_016843	TTCTCC	2	12	699368	699379	0 %	50 %	0 %	50 %	Non-Coding
18	NC_016843	ACGCGC	2	12	766866	766877	16.67 %	0 %	33.33 %	50 %	Non-Coding
19	NC_016843	ACGCAG	2	12	810772	810783	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
20	NC_016843	ACACGC	2	12	819607	819618	33.33 %	0 %	16.67 %	50 %	Non-Coding
21	NC_016843	GCAGGG	2	12	828059	828070	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
22	NC_016843	CAGAGA	2	12	853804	853815	50 %	0 %	33.33 %	16.67 %	Non-Coding
23	NC_016843	GTGCAC	2	12	870085	870096	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
24	NC_016843	AAAGAC	2	12	882644	882655	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
25	NC_016843	CCATCC	2	12	890593	890604	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
26	NC_016843	GGCGCA	2	12	907889	907900	16.67 %	0 %	50 %	33.33 %	Non-Coding
27	NC_016843	GAGCAG	2	12	995671	995682	33.33 %	0 %	50 %	16.67 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.