Hexa-nucleotide Non-Coding Repeats of Treponema pallidum subsp. pertenue str. SamoaD chromosome
Total Repeats: 27
S.No. | Genome ID | Motif | Iterations | Length | Start | End | A% | T% | G% | C% | Protein ID |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | NC_016842 | CCTCCC | 2 | 12 | 49437 | 49448 | 0 % | 16.67 % | 0 % | 83.33 % | Non-Coding |
2 | NC_016842 | GCACGA | 2 | 12 | 59447 | 59458 | 33.33 % | 0 % | 33.33 % | 33.33 % | Non-Coding |
3 | NC_016842 | TCTCAA | 2 | 12 | 124817 | 124828 | 33.33 % | 33.33 % | 0 % | 33.33 % | Non-Coding |
4 | NC_016842 | GGCTGG | 2 | 12 | 150292 | 150303 | 0 % | 16.67 % | 66.67 % | 16.67 % | Non-Coding |
5 | NC_016842 | TCGGGC | 2 | 12 | 150307 | 150318 | 0 % | 16.67 % | 50 % | 33.33 % | Non-Coding |
6 | NC_016842 | CTGCGG | 4 | 24 | 151484 | 151507 | 0 % | 16.67 % | 50 % | 33.33 % | Non-Coding |
7 | NC_016842 | CGGCTC | 2 | 12 | 151989 | 152000 | 0 % | 16.67 % | 33.33 % | 50 % | Non-Coding |
8 | NC_016842 | GTGCGA | 2 | 12 | 234291 | 234302 | 16.67 % | 16.67 % | 50 % | 16.67 % | Non-Coding |
9 | NC_016842 | TCCTTC | 2 | 12 | 235672 | 235683 | 0 % | 50 % | 0 % | 50 % | Non-Coding |
10 | NC_016842 | GTGCGA | 2 | 12 | 282703 | 282714 | 16.67 % | 16.67 % | 50 % | 16.67 % | Non-Coding |
11 | NC_016842 | TCCTTC | 2 | 12 | 284084 | 284095 | 0 % | 50 % | 0 % | 50 % | Non-Coding |
12 | NC_016842 | AATATA | 2 | 12 | 355324 | 355335 | 66.67 % | 33.33 % | 0 % | 0 % | Non-Coding |
13 | NC_016842 | TTTCCG | 2 | 12 | 372587 | 372598 | 0 % | 50 % | 16.67 % | 33.33 % | Non-Coding |
14 | NC_016842 | CGTGCG | 3 | 18 | 525323 | 525340 | 0 % | 16.67 % | 50 % | 33.33 % | Non-Coding |
15 | NC_016842 | TAACCC | 2 | 12 | 562236 | 562247 | 33.33 % | 16.67 % | 0 % | 50 % | Non-Coding |
16 | NC_016842 | ATACTG | 2 | 12 | 562330 | 562341 | 33.33 % | 33.33 % | 16.67 % | 16.67 % | Non-Coding |
17 | NC_016842 | TTCTCC | 2 | 12 | 699181 | 699192 | 0 % | 50 % | 0 % | 50 % | Non-Coding |
18 | NC_016842 | ACGCGC | 2 | 12 | 766679 | 766690 | 16.67 % | 0 % | 33.33 % | 50 % | Non-Coding |
19 | NC_016842 | ACGCAG | 2 | 12 | 810585 | 810596 | 33.33 % | 0 % | 33.33 % | 33.33 % | Non-Coding |
20 | NC_016842 | ACACGC | 2 | 12 | 819420 | 819431 | 33.33 % | 0 % | 16.67 % | 50 % | Non-Coding |
21 | NC_016842 | GCAGGG | 2 | 12 | 827872 | 827883 | 16.67 % | 0 % | 66.67 % | 16.67 % | Non-Coding |
22 | NC_016842 | CAGAGA | 2 | 12 | 853617 | 853628 | 50 % | 0 % | 33.33 % | 16.67 % | Non-Coding |
23 | NC_016842 | GTGCAC | 2 | 12 | 869898 | 869909 | 16.67 % | 16.67 % | 33.33 % | 33.33 % | Non-Coding |
24 | NC_016842 | AAAGAC | 2 | 12 | 882457 | 882468 | 66.67 % | 0 % | 16.67 % | 16.67 % | Non-Coding |
25 | NC_016842 | CCATCC | 2 | 12 | 890406 | 890417 | 16.67 % | 16.67 % | 0 % | 66.67 % | Non-Coding |
26 | NC_016842 | GGCGCA | 2 | 12 | 907702 | 907713 | 16.67 % | 0 % | 50 % | 33.33 % | Non-Coding |
27 | NC_016842 | GAGCAG | 2 | 12 | 995604 | 995615 | 33.33 % | 0 % | 50 % | 16.67 % | Non-Coding |