MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Marinithermus hydrothermalis DSM 14884 chromosome

Total Repeats: 81

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_015387	CCTTGA	2	12	38993	39004	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
2	NC_015387	GCCCTG	2	12	47683	47694	0 %	16.67 %	33.33 %	50 %	Non-Coding
3	NC_015387	TCGCCA	2	12	47834	47845	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
4	NC_015387	CACGGC	2	12	52263	52274	16.67 %	0 %	33.33 %	50 %	Non-Coding
5	NC_015387	GTACCC	2	12	53887	53898	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
6	NC_015387	TGGCCC	2	12	53988	53999	0 %	16.67 %	33.33 %	50 %	Non-Coding
7	NC_015387	CCTTCC	2	12	217875	217886	0 %	33.33 %	0 %	66.67 %	Non-Coding
8	NC_015387	GAACGA	2	12	224773	224784	50 %	0 %	33.33 %	16.67 %	Non-Coding
9	NC_015387	AGCCCG	2	12	226158	226169	16.67 %	0 %	33.33 %	50 %	Non-Coding
10	NC_015387	GAGGGC	2	12	249851	249862	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
11	NC_015387	TACCGT	2	12	251357	251368	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
12	NC_015387	GGAGGG	2	12	253418	253429	16.67 %	0 %	83.33 %	0 %	Non-Coding
13	NC_015387	GCAACG	2	12	274526	274537	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
14	NC_015387	ACGGGC	2	12	276125	276136	16.67 %	0 %	50 %	33.33 %	Non-Coding
15	NC_015387	CGGGCC	2	12	278990	279001	0 %	0 %	50 %	50 %	Non-Coding
16	NC_015387	CTATAC	2	12	284629	284640	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
17	NC_015387	TTTACG	2	12	309797	309808	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
18	NC_015387	CACGGC	2	12	314931	314942	16.67 %	0 %	33.33 %	50 %	Non-Coding
19	NC_015387	GCTTGG	2	12	364020	364031	0 %	33.33 %	50 %	16.67 %	Non-Coding
20	NC_015387	ACCCCC	2	12	422978	422989	16.67 %	0 %	0 %	83.33 %	Non-Coding
21	NC_015387	TCACGC	2	12	499866	499877	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
22	NC_015387	CACCCC	2	12	500035	500046	16.67 %	0 %	0 %	83.33 %	Non-Coding
23	NC_015387	GAGGGC	2	12	512602	512613	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
24	NC_015387	CGGAAA	2	12	574246	574257	50 %	0 %	33.33 %	16.67 %	Non-Coding
25	NC_015387	CCCGGC	2	12	586597	586608	0 %	0 %	33.33 %	66.67 %	Non-Coding
26	NC_015387	TAGCGT	2	12	707064	707075	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
27	NC_015387	CCCACG	2	12	725715	725726	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
28	NC_015387	GGGCGC	2	12	741419	741430	0 %	0 %	66.67 %	33.33 %	Non-Coding
29	NC_015387	CACGGC	2	12	766627	766638	16.67 %	0 %	33.33 %	50 %	Non-Coding
30	NC_015387	GGAAAT	2	12	775954	775965	50 %	16.67 %	33.33 %	0 %	Non-Coding
31	NC_015387	AGGGGC	2	12	777865	777876	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
32	NC_015387	GCCGTG	2	12	778087	778098	0 %	16.67 %	50 %	33.33 %	Non-Coding
33	NC_015387	CACGGC	2	12	816493	816504	16.67 %	0 %	33.33 %	50 %	Non-Coding
34	NC_015387	AACGTG	2	12	867833	867844	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
35	NC_015387	GAATTG	2	12	952625	952636	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
36	NC_015387	GCCGTG	2	12	953720	953731	0 %	16.67 %	50 %	33.33 %	Non-Coding
37	NC_015387	CAAAAG	2	12	961938	961949	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
38	NC_015387	AAGCCA	2	12	962051	962062	50 %	0 %	16.67 %	33.33 %	Non-Coding
39	NC_015387	TGCGAG	2	12	999398	999409	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
40	NC_015387	CGCCAG	2	12	1003433	1003444	16.67 %	0 %	33.33 %	50 %	Non-Coding
41	NC_015387	CTCGAG	2	12	1004103	1004114	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
42	NC_015387	GGGGGT	2	12	1076429	1076440	0 %	16.67 %	83.33 %	0 %	Non-Coding
43	NC_015387	CGTGGC	2	12	1154838	1154849	0 %	16.67 %	50 %	33.33 %	Non-Coding
44	NC_015387	GGTTTC	2	12	1185450	1185461	0 %	50 %	33.33 %	16.67 %	Non-Coding
45	NC_015387	ACCCCC	2	12	1193744	1193755	16.67 %	0 %	0 %	83.33 %	Non-Coding
46	NC_015387	GGTATA	2	12	1283075	1283086	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
47	NC_015387	GACGAT	2	12	1296484	1296495	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
48	NC_015387	CCAAAG	2	12	1297281	1297292	50 %	0 %	16.67 %	33.33 %	Non-Coding
49	NC_015387	TTCCGG	2	12	1332171	1332182	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
50	NC_015387	GTGATG	2	12	1369289	1369300	16.67 %	33.33 %	50 %	0 %	Non-Coding
51	NC_015387	CCGGGG	2	12	1369626	1369637	0 %	0 %	66.67 %	33.33 %	Non-Coding
52	NC_015387	ATTATC	2	12	1423815	1423826	33.33 %	50 %	0 %	16.67 %	Non-Coding
53	NC_015387	CGCCGA	2	12	1466428	1466439	16.67 %	0 %	33.33 %	50 %	Non-Coding
54	NC_015387	GAGCCC	2	12	1466692	1466703	16.67 %	0 %	33.33 %	50 %	Non-Coding
55	NC_015387	CTCCCG	2	12	1466761	1466772	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
56	NC_015387	CCACCC	2	12	1628211	1628222	16.67 %	0 %	0 %	83.33 %	Non-Coding
57	NC_015387	AGCATA	2	12	1685822	1685833	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
58	NC_015387	GATACA	2	12	1743493	1743504	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
59	NC_015387	CACGGC	2	12	1770859	1770870	16.67 %	0 %	33.33 %	50 %	Non-Coding
60	NC_015387	AACCCG	2	12	1772476	1772487	33.33 %	0 %	16.67 %	50 %	Non-Coding
61	NC_015387	GCAAGC	2	12	1796918	1796929	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
62	NC_015387	GAGGGT	2	12	1841720	1841731	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
63	NC_015387	GCCCCC	2	12	1908669	1908680	0 %	0 %	16.67 %	83.33 %	Non-Coding
64	NC_015387	TTGTGG	2	12	1925025	1925036	0 %	50 %	50 %	0 %	Non-Coding
65	NC_015387	GTACCC	2	12	1947531	1947542	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
66	NC_015387	TGGCCC	2	12	1947632	1947643	0 %	16.67 %	33.33 %	50 %	Non-Coding
67	NC_015387	CGCGGG	2	12	1955545	1955556	0 %	0 %	66.67 %	33.33 %	Non-Coding
68	NC_015387	CTTCCC	2	12	1992486	1992497	0 %	33.33 %	0 %	66.67 %	Non-Coding
69	NC_015387	GCCGTG	2	12	2017126	2017137	0 %	16.67 %	50 %	33.33 %	Non-Coding
70	NC_015387	TTACGT	2	12	2054391	2054402	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
71	NC_015387	CACCCA	2	12	2108224	2108235	33.33 %	0 %	0 %	66.67 %	Non-Coding
72	NC_015387	CCTTAC	2	12	2114163	2114174	16.67 %	33.33 %	0 %	50 %	Non-Coding
73	NC_015387	CCTGGC	2	12	2121736	2121747	0 %	16.67 %	33.33 %	50 %	Non-Coding
74	NC_015387	GCCGTG	2	12	2123558	2123569	0 %	16.67 %	50 %	33.33 %	Non-Coding
75	NC_015387	GTCTTC	2	12	2144826	2144837	0 %	50 %	16.67 %	33.33 %	Non-Coding
76	NC_015387	CGGGGG	2	12	2184198	2184209	0 %	0 %	83.33 %	16.67 %	Non-Coding
77	NC_015387	GTGGGC	2	12	2196330	2196341	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
78	NC_015387	GAAAGC	2	12	2196479	2196490	50 %	0 %	33.33 %	16.67 %	Non-Coding
79	NC_015387	CGAGGC	2	12	2196525	2196536	16.67 %	0 %	50 %	33.33 %	Non-Coding
80	NC_015387	CACGGC	2	12	2198001	2198012	16.67 %	0 %	33.33 %	50 %	Non-Coding
81	NC_015387	CACGGC	2	12	2219037	2219048	16.67 %	0 %	33.33 %	50 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.