Hexa-nucleotide Coding Repeats of Agrobacterium vitis S4 plasmid pTiS4
Total Repeats: 71
S.No. | Genome ID | Motif | Iterations | Length | Start | End | A% | T% | G% | C% | Protein ID |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | NC_011982 | GTGGAA | 2 | 12 | 428 | 439 | 33.33 % | 16.67 % | 50 % | 0 % | 222080118 |
2 | NC_011982 | TCGATC | 2 | 12 | 503 | 514 | 16.67 % | 33.33 % | 16.67 % | 33.33 % | 222080118 |
3 | NC_011982 | GAGTAT | 2 | 12 | 682 | 693 | 33.33 % | 33.33 % | 33.33 % | 0 % | 222080118 |
4 | NC_011982 | TGGATC | 2 | 12 | 1502 | 1513 | 16.67 % | 33.33 % | 33.33 % | 16.67 % | 222080119 |
5 | NC_011982 | AAAGGC | 2 | 12 | 14492 | 14503 | 50 % | 0 % | 33.33 % | 16.67 % | 222080131 |
6 | NC_011982 | CCGAAG | 2 | 12 | 14520 | 14531 | 33.33 % | 0 % | 33.33 % | 33.33 % | 222080131 |
7 | NC_011982 | CTTCGT | 2 | 12 | 17577 | 17588 | 0 % | 50 % | 16.67 % | 33.33 % | 222080133 |
8 | NC_011982 | TCGACC | 2 | 12 | 18040 | 18051 | 16.67 % | 16.67 % | 16.67 % | 50 % | 222080133 |
9 | NC_011982 | GAAGCG | 2 | 12 | 29463 | 29474 | 33.33 % | 0 % | 50 % | 16.67 % | 222080141 |
10 | NC_011982 | GCGCTC | 2 | 12 | 29907 | 29918 | 0 % | 16.67 % | 33.33 % | 50 % | 222080141 |
11 | NC_011982 | GTGCGC | 2 | 12 | 31207 | 31218 | 0 % | 16.67 % | 50 % | 33.33 % | 222080142 |
12 | NC_011982 | GCGCTG | 2 | 12 | 33106 | 33117 | 0 % | 16.67 % | 50 % | 33.33 % | 222080143 |
13 | NC_011982 | CTCGAT | 2 | 12 | 35762 | 35773 | 16.67 % | 33.33 % | 16.67 % | 33.33 % | 222080147 |
14 | NC_011982 | GATCTT | 2 | 12 | 45642 | 45653 | 16.67 % | 50 % | 16.67 % | 16.67 % | 222080151 |
15 | NC_011982 | AAGGGC | 2 | 12 | 46509 | 46520 | 33.33 % | 0 % | 50 % | 16.67 % | 222080151 |
16 | NC_011982 | GCCATT | 2 | 12 | 50534 | 50545 | 16.67 % | 33.33 % | 16.67 % | 33.33 % | 222080154 |
17 | NC_011982 | GCTCCG | 2 | 12 | 52743 | 52754 | 0 % | 16.67 % | 33.33 % | 50 % | 222080157 |
18 | NC_011982 | TCGGCA | 2 | 12 | 53084 | 53095 | 16.67 % | 16.67 % | 33.33 % | 33.33 % | 222080158 |
19 | NC_011982 | GAAAAG | 2 | 12 | 54119 | 54130 | 66.67 % | 0 % | 33.33 % | 0 % | 222080158 |
20 | NC_011982 | CGCAAG | 2 | 12 | 56214 | 56225 | 33.33 % | 0 % | 33.33 % | 33.33 % | 222080160 |
21 | NC_011982 | TCGATC | 2 | 12 | 58241 | 58252 | 16.67 % | 33.33 % | 16.67 % | 33.33 % | 222080162 |
22 | NC_011982 | CCGATC | 2 | 12 | 58829 | 58840 | 16.67 % | 16.67 % | 16.67 % | 50 % | 222080162 |
23 | NC_011982 | GGAGCG | 2 | 12 | 61228 | 61239 | 16.67 % | 0 % | 66.67 % | 16.67 % | 222080162 |
24 | NC_011982 | CCGCGG | 2 | 12 | 64064 | 64075 | 0 % | 0 % | 50 % | 50 % | 222080163 |
25 | NC_011982 | GCCCGC | 2 | 12 | 64850 | 64861 | 0 % | 0 % | 33.33 % | 66.67 % | 222080164 |
26 | NC_011982 | ACGCCG | 2 | 12 | 74960 | 74971 | 16.67 % | 0 % | 33.33 % | 50 % | 222080173 |
27 | NC_011982 | CGAGGA | 2 | 12 | 82588 | 82599 | 33.33 % | 0 % | 50 % | 16.67 % | 222080179 |
28 | NC_011982 | CTCGAT | 2 | 12 | 86640 | 86651 | 16.67 % | 33.33 % | 16.67 % | 33.33 % | 222080186 |
29 | NC_011982 | TCGAGC | 2 | 12 | 87703 | 87714 | 16.67 % | 16.67 % | 33.33 % | 33.33 % | 222080187 |
30 | NC_011982 | TAGGCG | 2 | 12 | 87727 | 87738 | 16.67 % | 16.67 % | 50 % | 16.67 % | 222080187 |
31 | NC_011982 | AGACGA | 2 | 12 | 88792 | 88803 | 50 % | 0 % | 33.33 % | 16.67 % | 222080187 |
32 | NC_011982 | TCGCTG | 2 | 12 | 89169 | 89180 | 0 % | 33.33 % | 33.33 % | 33.33 % | 222080187 |
33 | NC_011982 | CGAGGC | 2 | 12 | 92591 | 92602 | 16.67 % | 0 % | 50 % | 33.33 % | 222080189 |
34 | NC_011982 | ACATCG | 2 | 12 | 95162 | 95173 | 33.33 % | 16.67 % | 16.67 % | 33.33 % | 222080193 |
35 | NC_011982 | TACGGC | 2 | 12 | 98917 | 98928 | 16.67 % | 16.67 % | 33.33 % | 33.33 % | 222080197 |
36 | NC_011982 | CTTCGT | 2 | 12 | 105446 | 105457 | 0 % | 50 % | 16.67 % | 33.33 % | 222080202 |
37 | NC_011982 | CGTCTT | 2 | 12 | 115547 | 115558 | 0 % | 50 % | 16.67 % | 33.33 % | 222080210 |
38 | NC_011982 | TTATGG | 2 | 12 | 128147 | 128158 | 16.67 % | 50 % | 33.33 % | 0 % | 222080220 |
39 | NC_011982 | CCAGCG | 2 | 12 | 129719 | 129730 | 16.67 % | 0 % | 33.33 % | 50 % | 222080221 |
40 | NC_011982 | CTCGAT | 2 | 12 | 130460 | 130471 | 16.67 % | 33.33 % | 16.67 % | 33.33 % | 222080222 |
41 | NC_011982 | GTAGCC | 2 | 12 | 132174 | 132185 | 16.67 % | 16.67 % | 33.33 % | 33.33 % | 222080223 |
42 | NC_011982 | TCCTCG | 2 | 12 | 132429 | 132440 | 0 % | 33.33 % | 16.67 % | 50 % | 222080223 |
43 | NC_011982 | ATGGCT | 2 | 12 | 132794 | 132805 | 16.67 % | 33.33 % | 33.33 % | 16.67 % | 222080223 |
44 | NC_011982 | CGCTGA | 2 | 12 | 133810 | 133821 | 16.67 % | 16.67 % | 33.33 % | 33.33 % | 222080224 |
45 | NC_011982 | CTGATG | 2 | 12 | 137646 | 137657 | 16.67 % | 33.33 % | 33.33 % | 16.67 % | 222080225 |
46 | NC_011982 | ATAAAA | 2 | 12 | 138619 | 138630 | 83.33 % | 16.67 % | 0 % | 0 % | 222080226 |
47 | NC_011982 | ATTCCA | 2 | 12 | 138654 | 138665 | 33.33 % | 33.33 % | 0 % | 33.33 % | 222080226 |
48 | NC_011982 | GCGATC | 2 | 12 | 142794 | 142805 | 16.67 % | 16.67 % | 33.33 % | 33.33 % | 222080227 |
49 | NC_011982 | TCCTCA | 2 | 12 | 155793 | 155804 | 16.67 % | 33.33 % | 0 % | 50 % | 222080234 |
50 | NC_011982 | ACGACA | 2 | 12 | 159459 | 159470 | 50 % | 0 % | 16.67 % | 33.33 % | 222080238 |
51 | NC_011982 | AAATCC | 2 | 12 | 160970 | 160981 | 50 % | 16.67 % | 0 % | 33.33 % | 222080240 |
52 | NC_011982 | GGCTGC | 2 | 12 | 162619 | 162630 | 0 % | 16.67 % | 50 % | 33.33 % | 222080241 |
53 | NC_011982 | CGTCTC | 2 | 12 | 165308 | 165319 | 0 % | 33.33 % | 16.67 % | 50 % | 222080244 |
54 | NC_011982 | TTCCTC | 2 | 12 | 167820 | 167831 | 0 % | 50 % | 0 % | 50 % | 222080246 |
55 | NC_011982 | AAGACG | 2 | 12 | 171812 | 171823 | 50 % | 0 % | 33.33 % | 16.67 % | 222080250 |
56 | NC_011982 | AAGACG | 2 | 12 | 183221 | 183232 | 50 % | 0 % | 33.33 % | 16.67 % | 222080258 |
57 | NC_011982 | GCAAAA | 2 | 12 | 186003 | 186014 | 66.67 % | 0 % | 16.67 % | 16.67 % | 222080259 |
58 | NC_011982 | TACCAA | 2 | 12 | 186747 | 186758 | 50 % | 16.67 % | 0 % | 33.33 % | 222080259 |
59 | NC_011982 | TCACGA | 2 | 12 | 192342 | 192353 | 33.33 % | 16.67 % | 16.67 % | 33.33 % | 222080264 |
60 | NC_011982 | GGAAGA | 6 | 36 | 200880 | 200915 | 50 % | 0 % | 50 % | 0 % | 222080273 |
61 | NC_011982 | TTTGAT | 2 | 12 | 207359 | 207370 | 16.67 % | 66.67 % | 16.67 % | 0 % | 222080279 |
62 | NC_011982 | AATTTC | 2 | 12 | 208366 | 208377 | 33.33 % | 50 % | 0 % | 16.67 % | 222080280 |
63 | NC_011982 | CAGTAG | 2 | 12 | 222330 | 222341 | 33.33 % | 16.67 % | 33.33 % | 16.67 % | 222080287 |
64 | NC_011982 | ACATCG | 2 | 12 | 225581 | 225592 | 33.33 % | 16.67 % | 16.67 % | 33.33 % | 222080291 |
65 | NC_011982 | ACGGCG | 2 | 12 | 231626 | 231637 | 16.67 % | 0 % | 50 % | 33.33 % | 222080296 |
66 | NC_011982 | GACGTG | 2 | 12 | 242632 | 242643 | 16.67 % | 16.67 % | 50 % | 16.67 % | 222080306 |
67 | NC_011982 | GCGTCA | 2 | 12 | 250964 | 250975 | 16.67 % | 16.67 % | 33.33 % | 33.33 % | 222080313 |
68 | NC_011982 | TTGGCG | 2 | 12 | 251625 | 251636 | 0 % | 33.33 % | 50 % | 16.67 % | 222080314 |
69 | NC_011982 | CCGGCT | 2 | 12 | 252870 | 252881 | 0 % | 16.67 % | 33.33 % | 50 % | 222080315 |
70 | NC_011982 | CTGTGA | 2 | 12 | 256877 | 256888 | 16.67 % | 33.33 % | 33.33 % | 16.67 % | 222080319 |
71 | NC_011982 | CGGCGA | 2 | 12 | 257975 | 257986 | 16.67 % | 0 % | 50 % | 33.33 % | 222080321 |