MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Coxiella burnetii CbuK_Q154 plasmid pQpRS_K_Q154

Total Repeats: 142

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_011526	TTG	2	6	9	14	0 %	66.67 %	33.33 %	0 %	Non-Coding
2	NC_011526	GTC	2	6	675	680	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
3	NC_011526	CCG	2	6	733	738	0 %	0 %	33.33 %	66.67 %	Non-Coding
4	NC_011526	CAT	2	6	901	906	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
5	NC_011526	TGA	2	6	959	964	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
6	NC_011526	AGA	2	6	1017	1022	66.67 %	0 %	33.33 %	0 %	Non-Coding
7	NC_011526	TTC	2	6	1249	1254	0 %	66.67 %	0 %	33.33 %	Non-Coding
8	NC_011526	GCC	2	6	1268	1273	0 %	0 %	33.33 %	66.67 %	Non-Coding
9	NC_011526	TAT	2	6	1558	1563	33.33 %	66.67 %	0 %	0 %	Non-Coding
10	NC_011526	GAG	2	6	1583	1588	33.33 %	0 %	66.67 %	0 %	Non-Coding
11	NC_011526	ATT	2	6	1594	1599	33.33 %	66.67 %	0 %	0 %	Non-Coding
12	NC_011526	TAA	2	6	2828	2833	66.67 %	33.33 %	0 %	0 %	Non-Coding
13	NC_011526	ATT	2	6	3684	3689	33.33 %	66.67 %	0 %	0 %	Non-Coding
14	NC_011526	TGC	2	6	3770	3775	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
15	NC_011526	AAT	2	6	3803	3808	66.67 %	33.33 %	0 %	0 %	Non-Coding
16	NC_011526	ATA	2	6	3845	3850	66.67 %	33.33 %	0 %	0 %	Non-Coding
17	NC_011526	TAA	2	6	3873	3878	66.67 %	33.33 %	0 %	0 %	Non-Coding
18	NC_011526	CTA	2	6	3927	3932	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19	NC_011526	ACA	2	6	4222	4227	66.67 %	0 %	0 %	33.33 %	Non-Coding
20	NC_011526	ACA	2	6	6363	6368	66.67 %	0 %	0 %	33.33 %	Non-Coding
21	NC_011526	ATA	2	6	6419	6424	66.67 %	33.33 %	0 %	0 %	Non-Coding
22	NC_011526	ATG	2	6	6425	6430	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
23	NC_011526	GAA	2	6	6590	6595	66.67 %	0 %	33.33 %	0 %	Non-Coding
24	NC_011526	TGT	2	6	7654	7659	0 %	66.67 %	33.33 %	0 %	Non-Coding
25	NC_011526	GCT	2	6	7683	7688	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
26	NC_011526	CCT	2	6	8878	8883	0 %	33.33 %	0 %	66.67 %	Non-Coding
27	NC_011526	TAT	2	6	8916	8921	33.33 %	66.67 %	0 %	0 %	Non-Coding
28	NC_011526	AGA	2	6	8925	8930	66.67 %	0 %	33.33 %	0 %	Non-Coding
29	NC_011526	AAT	2	6	9062	9067	66.67 %	33.33 %	0 %	0 %	Non-Coding
30	NC_011526	TAT	3	9	9297	9305	33.33 %	66.67 %	0 %	0 %	Non-Coding
31	NC_011526	GAT	2	6	10100	10105	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
32	NC_011526	ATT	2	6	11349	11354	33.33 %	66.67 %	0 %	0 %	Non-Coding
33	NC_011526	ATA	2	6	11427	11432	66.67 %	33.33 %	0 %	0 %	Non-Coding
34	NC_011526	AGC	2	6	11447	11452	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
35	NC_011526	AGA	2	6	11470	11475	66.67 %	0 %	33.33 %	0 %	Non-Coding
36	NC_011526	AAT	2	6	11513	11518	66.67 %	33.33 %	0 %	0 %	Non-Coding
37	NC_011526	TGA	2	6	11971	11976	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
38	NC_011526	ATT	2	6	12075	12080	33.33 %	66.67 %	0 %	0 %	Non-Coding
39	NC_011526	GTA	2	6	12140	12145	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
40	NC_011526	GAT	2	6	12149	12154	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
41	NC_011526	ATA	2	6	12189	12194	66.67 %	33.33 %	0 %	0 %	Non-Coding
42	NC_011526	TTA	2	6	12229	12234	33.33 %	66.67 %	0 %	0 %	Non-Coding
43	NC_011526	ATT	2	6	12291	12296	33.33 %	66.67 %	0 %	0 %	Non-Coding
44	NC_011526	ACC	2	6	12413	12418	33.33 %	0 %	0 %	66.67 %	Non-Coding
45	NC_011526	TTA	2	6	12481	12486	33.33 %	66.67 %	0 %	0 %	Non-Coding
46	NC_011526	ACA	2	6	12607	12612	66.67 %	0 %	0 %	33.33 %	Non-Coding
47	NC_011526	ACA	2	6	12614	12619	66.67 %	0 %	0 %	33.33 %	Non-Coding
48	NC_011526	TTC	2	6	12652	12657	0 %	66.67 %	0 %	33.33 %	Non-Coding
49	NC_011526	GAA	2	6	12770	12775	66.67 %	0 %	33.33 %	0 %	Non-Coding
50	NC_011526	CGT	2	6	12781	12786	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
51	NC_011526	AGG	2	6	12806	12811	33.33 %	0 %	66.67 %	0 %	Non-Coding
52	NC_011526	ACC	2	6	12832	12837	33.33 %	0 %	0 %	66.67 %	Non-Coding
53	NC_011526	ACG	2	6	13113	13118	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
54	NC_011526	CTA	2	6	13151	13156	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
55	NC_011526	CAA	2	6	13245	13250	66.67 %	0 %	0 %	33.33 %	Non-Coding
56	NC_011526	ACG	2	6	13255	13260	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
57	NC_011526	ATA	2	6	13540	13545	66.67 %	33.33 %	0 %	0 %	Non-Coding
58	NC_011526	TAT	2	6	13691	13696	33.33 %	66.67 %	0 %	0 %	Non-Coding
59	NC_011526	CAA	2	6	13751	13756	66.67 %	0 %	0 %	33.33 %	Non-Coding
60	NC_011526	CAT	2	6	13849	13854	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
61	NC_011526	CGG	2	6	13864	13869	0 %	0 %	66.67 %	33.33 %	Non-Coding
62	NC_011526	ATG	2	6	13972	13977	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
63	NC_011526	GAT	2	6	14018	14023	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
64	NC_011526	TAT	2	6	14037	14042	33.33 %	66.67 %	0 %	0 %	Non-Coding
65	NC_011526	GCC	2	6	14085	14090	0 %	0 %	33.33 %	66.67 %	Non-Coding
66	NC_011526	ACG	2	6	14176	14181	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
67	NC_011526	ATG	2	6	14236	14241	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
68	NC_011526	CAG	2	6	14262	14267	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
69	NC_011526	GAT	2	6	14316	14321	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
70	NC_011526	AAG	2	6	14449	14454	66.67 %	0 %	33.33 %	0 %	Non-Coding
71	NC_011526	GCG	2	6	14602	14607	0 %	0 %	66.67 %	33.33 %	Non-Coding
72	NC_011526	AAC	2	6	14667	14672	66.67 %	0 %	0 %	33.33 %	Non-Coding
73	NC_011526	GAT	2	6	14726	14731	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
74	NC_011526	ACG	2	6	14761	14766	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
75	NC_011526	GAT	2	6	14895	14900	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
76	NC_011526	GCA	2	6	14926	14931	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
77	NC_011526	ATC	2	6	14990	14995	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
78	NC_011526	GTC	2	6	15357	15362	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
79	NC_011526	CCG	2	6	15385	15390	0 %	0 %	33.33 %	66.67 %	Non-Coding
80	NC_011526	TGG	3	9	15454	15462	0 %	33.33 %	66.67 %	0 %	Non-Coding
81	NC_011526	CGG	2	6	15478	15483	0 %	0 %	66.67 %	33.33 %	Non-Coding
82	NC_011526	GCG	2	6	15502	15507	0 %	0 %	66.67 %	33.33 %	Non-Coding
83	NC_011526	GCG	2	6	15643	15648	0 %	0 %	66.67 %	33.33 %	Non-Coding
84	NC_011526	ACC	2	6	15725	15730	33.33 %	0 %	0 %	66.67 %	Non-Coding
85	NC_011526	ATT	2	6	15793	15798	33.33 %	66.67 %	0 %	0 %	Non-Coding
86	NC_011526	AGA	3	9	15900	15908	66.67 %	0 %	33.33 %	0 %	Non-Coding
87	NC_011526	CTT	2	6	17604	17609	0 %	66.67 %	0 %	33.33 %	Non-Coding
88	NC_011526	ATT	2	6	17689	17694	33.33 %	66.67 %	0 %	0 %	Non-Coding
89	NC_011526	TCC	2	6	17976	17981	0 %	33.33 %	0 %	66.67 %	Non-Coding
90	NC_011526	AAT	2	6	18124	18129	66.67 %	33.33 %	0 %	0 %	Non-Coding
91	NC_011526	ATC	2	6	18196	18201	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
92	NC_011526	TAA	4	12	18652	18663	66.67 %	33.33 %	0 %	0 %	Non-Coding
93	NC_011526	GAA	2	6	18684	18689	66.67 %	0 %	33.33 %	0 %	Non-Coding
94	NC_011526	TTC	2	6	18707	18712	0 %	66.67 %	0 %	33.33 %	Non-Coding
95	NC_011526	TAA	2	6	18905	18910	66.67 %	33.33 %	0 %	0 %	Non-Coding
96	NC_011526	TAC	2	6	19000	19005	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
97	NC_011526	ACG	2	6	19043	19048	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
98	NC_011526	CTG	2	6	19189	19194	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
99	NC_011526	TAA	2	6	19247	19252	66.67 %	33.33 %	0 %	0 %	Non-Coding
100	NC_011526	ATA	2	6	21170	21175	66.67 %	33.33 %	0 %	0 %	Non-Coding
101	NC_011526	TAA	2	6	21214	21219	66.67 %	33.33 %	0 %	0 %	Non-Coding
102	NC_011526	CCT	2	6	21247	21252	0 %	33.33 %	0 %	66.67 %	Non-Coding
103	NC_011526	TTA	2	6	21266	21271	33.33 %	66.67 %	0 %	0 %	Non-Coding
104	NC_011526	ATA	2	6	21358	21363	66.67 %	33.33 %	0 %	0 %	Non-Coding
105	NC_011526	AGA	2	6	21388	21393	66.67 %	0 %	33.33 %	0 %	Non-Coding
106	NC_011526	ATA	2	6	21523	21528	66.67 %	33.33 %	0 %	0 %	Non-Coding
107	NC_011526	TCT	2	6	22103	22108	0 %	66.67 %	0 %	33.33 %	Non-Coding
108	NC_011526	GAA	2	6	22153	22158	66.67 %	0 %	33.33 %	0 %	Non-Coding
109	NC_011526	CTT	2	6	22212	22217	0 %	66.67 %	0 %	33.33 %	Non-Coding
110	NC_011526	TCT	2	6	22221	22226	0 %	66.67 %	0 %	33.33 %	Non-Coding
111	NC_011526	ATT	2	6	22523	22528	33.33 %	66.67 %	0 %	0 %	Non-Coding
112	NC_011526	TAT	2	6	22537	22542	33.33 %	66.67 %	0 %	0 %	Non-Coding
113	NC_011526	TAA	2	6	22568	22573	66.67 %	33.33 %	0 %	0 %	Non-Coding
114	NC_011526	ATT	2	6	22763	22768	33.33 %	66.67 %	0 %	0 %	Non-Coding
115	NC_011526	ATG	2	6	22982	22987	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
116	NC_011526	TCC	2	6	23236	23241	0 %	33.33 %	0 %	66.67 %	Non-Coding
117	NC_011526	ACT	2	6	23248	23253	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
118	NC_011526	TAG	2	6	23275	23280	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
119	NC_011526	TTA	2	6	23282	23287	33.33 %	66.67 %	0 %	0 %	Non-Coding
120	NC_011526	ACA	2	6	23339	23344	66.67 %	0 %	0 %	33.33 %	Non-Coding
121	NC_011526	CAT	2	6	23371	23376	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
122	NC_011526	TAA	2	6	23477	23482	66.67 %	33.33 %	0 %	0 %	Non-Coding
123	NC_011526	ATA	2	6	25597	25602	66.67 %	33.33 %	0 %	0 %	Non-Coding
124	NC_011526	CTT	2	6	25686	25691	0 %	66.67 %	0 %	33.33 %	Non-Coding
125	NC_011526	CCA	2	6	25698	25703	33.33 %	0 %	0 %	66.67 %	Non-Coding
126	NC_011526	TGA	2	6	26314	26319	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
127	NC_011526	TTC	2	6	30145	30150	0 %	66.67 %	0 %	33.33 %	Non-Coding
128	NC_011526	GAA	2	6	31749	31754	66.67 %	0 %	33.33 %	0 %	Non-Coding
129	NC_011526	TTA	3	9	32144	32152	33.33 %	66.67 %	0 %	0 %	Non-Coding
130	NC_011526	ATT	2	6	32237	32242	33.33 %	66.67 %	0 %	0 %	Non-Coding
131	NC_011526	TTG	2	6	32603	32608	0 %	66.67 %	33.33 %	0 %	Non-Coding
132	NC_011526	TCT	2	6	32638	32643	0 %	66.67 %	0 %	33.33 %	Non-Coding
133	NC_011526	CGC	2	6	33334	33339	0 %	0 %	33.33 %	66.67 %	Non-Coding
134	NC_011526	CTA	2	6	33356	33361	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
135	NC_011526	CAA	2	6	33412	33417	66.67 %	0 %	0 %	33.33 %	Non-Coding
136	NC_011526	CTT	2	6	33423	33428	0 %	66.67 %	0 %	33.33 %	Non-Coding
137	NC_011526	TTC	2	6	33498	33503	0 %	66.67 %	0 %	33.33 %	Non-Coding
138	NC_011526	AAT	2	6	34719	34724	66.67 %	33.33 %	0 %	0 %	Non-Coding
139	NC_011526	ATA	2	6	38985	38990	66.67 %	33.33 %	0 %	0 %	Non-Coding
140	NC_011526	GAG	2	6	39011	39016	33.33 %	0 %	66.67 %	0 %	Non-Coding
141	NC_011526	TTC	2	6	39025	39030	0 %	66.67 %	0 %	33.33 %	Non-Coding
142	NC_011526	TAA	2	6	39191	39196	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.