MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Coxiella burnetii Dugway 5J108-111 chromosome

Total Repeats: 130

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009727	CCTGTA	2	12	17972	17983	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
2	NC_009727	AATTTG	2	12	20591	20602	33.33 %	50 %	16.67 %	0 %	Non-Coding
3	NC_009727	GAAGAG	2	12	21243	21254	50 %	0 %	50 %	0 %	Non-Coding
4	NC_009727	AAAATG	2	12	21582	21593	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
5	NC_009727	AAAATT	2	12	92011	92022	66.67 %	33.33 %	0 %	0 %	Non-Coding
6	NC_009727	AGACAT	2	12	101871	101882	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
7	NC_009727	ATTTTT	2	12	101985	101996	16.67 %	83.33 %	0 %	0 %	Non-Coding
8	NC_009727	ACCATT	2	12	102027	102038	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
9	NC_009727	ATTATA	2	12	118445	118456	50 %	50 %	0 %	0 %	Non-Coding
10	NC_009727	GCGCTT	2	12	132762	132773	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
11	NC_009727	GTTTTA	2	12	260247	260258	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
12	NC_009727	TAGAAA	2	12	262128	262139	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
13	NC_009727	TAAAAT	2	12	265967	265978	66.67 %	33.33 %	0 %	0 %	Non-Coding
14	NC_009727	GATGGT	2	12	266505	266516	16.67 %	33.33 %	50 %	0 %	Non-Coding
15	NC_009727	ATCAAA	2	12	267250	267261	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
16	NC_009727	TGAAAA	2	12	301107	301118	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
17	NC_009727	ATTAAA	2	12	301138	301149	66.67 %	33.33 %	0 %	0 %	Non-Coding
18	NC_009727	TCAGAA	2	12	303141	303152	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
19	NC_009727	ACCCCC	2	12	373833	373844	16.67 %	0 %	0 %	83.33 %	Non-Coding
20	NC_009727	AGCTTA	2	12	377153	377164	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
21	NC_009727	TAAAGA	2	12	389569	389580	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
22	NC_009727	GGATTT	2	12	409039	409050	16.67 %	50 %	33.33 %	0 %	Non-Coding
23	NC_009727	ACCGAA	2	12	409070	409081	50 %	0 %	16.67 %	33.33 %	Non-Coding
24	NC_009727	TTTTCG	2	12	413808	413819	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
25	NC_009727	GTTTTC	2	12	413983	413994	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
26	NC_009727	ATTTAT	2	12	426884	426895	33.33 %	66.67 %	0 %	0 %	Non-Coding
27	NC_009727	GGAGAA	2	12	438272	438283	50 %	0 %	50 %	0 %	Non-Coding
28	NC_009727	AGCTGC	2	12	439137	439148	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
29	NC_009727	CAATAA	2	12	439587	439598	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
30	NC_009727	AAAAAT	2	12	473603	473614	83.33 %	16.67 %	0 %	0 %	Non-Coding
31	NC_009727	AAAGAA	2	12	474769	474780	83.33 %	0 %	16.67 %	0 %	Non-Coding
32	NC_009727	AAAGAA	2	12	486961	486972	83.33 %	0 %	16.67 %	0 %	Non-Coding
33	NC_009727	GAAAAC	2	12	513613	513624	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
34	NC_009727	TTGCAA	2	12	519523	519534	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
35	NC_009727	TTAACC	2	12	566707	566718	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
36	NC_009727	TAAAAC	2	12	599300	599311	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
37	NC_009727	CGAAAC	2	12	600698	600709	50 %	0 %	16.67 %	33.33 %	Non-Coding
38	NC_009727	GAATAA	2	12	613396	613407	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
39	NC_009727	GAAAAC	2	12	655570	655581	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
40	NC_009727	GCCGTA	2	12	754715	754726	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
41	NC_009727	GCTTTT	2	12	755879	755890	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
42	NC_009727	TTGCTT	2	12	757351	757362	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
43	NC_009727	TTGCCT	2	12	757691	757702	0 %	50 %	16.67 %	33.33 %	Non-Coding
44	NC_009727	GAAAAC	2	12	772052	772063	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
45	NC_009727	AAATTA	2	12	796488	796499	66.67 %	33.33 %	0 %	0 %	Non-Coding
46	NC_009727	ATCTTA	2	12	836039	836050	33.33 %	50 %	0 %	16.67 %	Non-Coding
47	NC_009727	CTATTC	2	12	845019	845030	16.67 %	50 %	0 %	33.33 %	Non-Coding
48	NC_009727	TTTTCT	2	12	845408	845419	0 %	83.33 %	0 %	16.67 %	Non-Coding
49	NC_009727	TTGGGA	2	12	856411	856422	16.67 %	33.33 %	50 %	0 %	Non-Coding
50	NC_009727	ATGCTT	2	12	864822	864833	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
51	NC_009727	ATTGAG	2	12	867670	867681	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
52	NC_009727	CTAAGA	2	12	940697	940708	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
53	NC_009727	ATAAGG	2	12	940715	940726	50 %	16.67 %	33.33 %	0 %	Non-Coding
54	NC_009727	ATTTTT	2	12	959571	959582	16.67 %	83.33 %	0 %	0 %	Non-Coding
55	NC_009727	AAAAAT	2	12	976429	976440	83.33 %	16.67 %	0 %	0 %	Non-Coding
56	NC_009727	CAGTGA	2	12	976606	976617	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
57	NC_009727	CTCACC	2	12	977546	977557	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
58	NC_009727	TGGGGG	2	12	983345	983356	0 %	16.67 %	83.33 %	0 %	Non-Coding
59	NC_009727	TTTTTG	2	12	992706	992717	0 %	83.33 %	16.67 %	0 %	Non-Coding
60	NC_009727	ATCTTT	2	12	1008633	1008644	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
61	NC_009727	TGAAAA	2	12	1009450	1009461	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
62	NC_009727	CTTACT	2	12	1013727	1013738	16.67 %	50 %	0 %	33.33 %	Non-Coding
63	NC_009727	CCTTAT	2	12	1065714	1065725	16.67 %	50 %	0 %	33.33 %	Non-Coding
64	NC_009727	TGAAAT	2	12	1066575	1066586	50 %	33.33 %	16.67 %	0 %	Non-Coding
65	NC_009727	ACGATT	2	12	1077866	1077877	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
66	NC_009727	GATGAG	2	12	1078345	1078356	33.33 %	16.67 %	50 %	0 %	Non-Coding
67	NC_009727	AAATTT	2	12	1078360	1078371	50 %	50 %	0 %	0 %	Non-Coding
68	NC_009727	AGAATT	2	12	1096937	1096948	50 %	33.33 %	16.67 %	0 %	Non-Coding
69	NC_009727	TGAAGA	2	12	1097883	1097894	50 %	16.67 %	33.33 %	0 %	Non-Coding
70	NC_009727	GTCGAA	2	12	1099994	1100005	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
71	NC_009727	TTTAAT	2	12	1105284	1105295	33.33 %	66.67 %	0 %	0 %	Non-Coding
72	NC_009727	ATGAAA	2	12	1129513	1129524	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
73	NC_009727	ATTATC	2	12	1130529	1130540	33.33 %	50 %	0 %	16.67 %	Non-Coding
74	NC_009727	TTTTTC	2	12	1131912	1131923	0 %	83.33 %	0 %	16.67 %	Non-Coding
75	NC_009727	CTGTTG	2	12	1139170	1139181	0 %	50 %	33.33 %	16.67 %	Non-Coding
76	NC_009727	GTTTGA	2	12	1154853	1154864	16.67 %	50 %	33.33 %	0 %	Non-Coding
77	NC_009727	CCCGGT	2	12	1230972	1230983	0 %	16.67 %	33.33 %	50 %	Non-Coding
78	NC_009727	CGTGGC	2	12	1241007	1241018	0 %	16.67 %	50 %	33.33 %	Non-Coding
79	NC_009727	ATTTCT	2	12	1257936	1257947	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
80	NC_009727	GTTATA	2	12	1282672	1282683	33.33 %	50 %	16.67 %	0 %	Non-Coding
81	NC_009727	AGCCGT	2	12	1285775	1285786	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
82	NC_009727	AATTTG	2	12	1293474	1293485	33.33 %	50 %	16.67 %	0 %	Non-Coding
83	NC_009727	TGGGGG	2	12	1293981	1293992	0 %	16.67 %	83.33 %	0 %	Non-Coding
84	NC_009727	TGGTTA	2	12	1344866	1344877	16.67 %	50 %	33.33 %	0 %	Non-Coding
85	NC_009727	AGTGAA	2	12	1353408	1353419	50 %	16.67 %	33.33 %	0 %	Non-Coding
86	NC_009727	AAACGC	2	12	1354699	1354710	50 %	0 %	16.67 %	33.33 %	Non-Coding
87	NC_009727	CCAATC	2	12	1382163	1382174	33.33 %	16.67 %	0 %	50 %	Non-Coding
88	NC_009727	TAGAAG	2	12	1386483	1386494	50 %	16.67 %	33.33 %	0 %	Non-Coding
89	NC_009727	TGAATA	2	12	1413298	1413309	50 %	33.33 %	16.67 %	0 %	Non-Coding
90	NC_009727	AATTCT	2	12	1420245	1420256	33.33 %	50 %	0 %	16.67 %	Non-Coding
91	NC_009727	GGGATG	2	12	1432494	1432505	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
92	NC_009727	TTATCT	2	12	1517378	1517389	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
93	NC_009727	CTTTTT	2	12	1517619	1517630	0 %	83.33 %	0 %	16.67 %	Non-Coding
94	NC_009727	GCCCAT	2	12	1517820	1517831	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
95	NC_009727	CTGGCG	2	12	1531311	1531322	0 %	16.67 %	50 %	33.33 %	Non-Coding
96	NC_009727	ACCGGA	2	12	1550659	1550670	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
97	NC_009727	TTTTGG	2	12	1553400	1553411	0 %	66.67 %	33.33 %	0 %	Non-Coding
98	NC_009727	CCCCAA	2	12	1566891	1566902	33.33 %	0 %	0 %	66.67 %	Non-Coding
99	NC_009727	CGGAAT	2	12	1589594	1589605	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
100	NC_009727	CATTTT	2	12	1609441	1609452	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
101	NC_009727	TTTTTC	2	12	1629164	1629175	0 %	83.33 %	0 %	16.67 %	Non-Coding
102	NC_009727	GTTGGG	2	12	1642269	1642280	0 %	33.33 %	66.67 %	0 %	Non-Coding
103	NC_009727	TCATCG	2	12	1642883	1642894	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
104	NC_009727	TTATAT	2	12	1652729	1652740	33.33 %	66.67 %	0 %	0 %	Non-Coding
105	NC_009727	ATTTAA	2	12	1681979	1681990	50 %	50 %	0 %	0 %	Non-Coding
106	NC_009727	GCCTTC	2	12	1688706	1688717	0 %	33.33 %	16.67 %	50 %	Non-Coding
107	NC_009727	TTCGCG	2	12	1689716	1689727	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
108	NC_009727	CCGACG	2	12	1689845	1689856	16.67 %	0 %	33.33 %	50 %	Non-Coding
109	NC_009727	ATCGTA	2	12	1694906	1694917	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
110	NC_009727	TTTTTA	2	12	1695718	1695729	16.67 %	83.33 %	0 %	0 %	Non-Coding
111	NC_009727	TCAATT	2	12	1719578	1719589	33.33 %	50 %	0 %	16.67 %	Non-Coding
112	NC_009727	GATGTT	2	12	1719646	1719657	16.67 %	50 %	33.33 %	0 %	Non-Coding
113	NC_009727	CATTTT	2	12	1720184	1720195	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
114	NC_009727	TATCGG	2	12	1748222	1748233	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
115	NC_009727	TCAGTT	2	12	1750434	1750445	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
116	NC_009727	GCCCCG	2	12	1765351	1765362	0 %	0 %	33.33 %	66.67 %	Non-Coding
117	NC_009727	AAATAA	2	12	1800523	1800534	83.33 %	16.67 %	0 %	0 %	Non-Coding
118	NC_009727	CCCTTC	2	12	1815999	1816010	0 %	33.33 %	0 %	66.67 %	Non-Coding
119	NC_009727	ATCCTT	2	12	1854618	1854629	16.67 %	50 %	0 %	33.33 %	Non-Coding
120	NC_009727	AAAAAC	2	12	1883116	1883127	83.33 %	0 %	0 %	16.67 %	Non-Coding
121	NC_009727	TCAGGA	2	12	1884183	1884194	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
122	NC_009727	AAATTT	2	12	1887418	1887429	50 %	50 %	0 %	0 %	Non-Coding
123	NC_009727	ATTTCA	2	12	1889231	1889242	33.33 %	50 %	0 %	16.67 %	Non-Coding
124	NC_009727	TGCCAA	2	12	1925425	1925436	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
125	NC_009727	CCATTT	2	12	1943566	1943577	16.67 %	50 %	0 %	33.33 %	Non-Coding
126	NC_009727	TTTTCA	2	12	2002789	2002800	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
127	NC_009727	GGAAAA	2	12	2058852	2058863	66.67 %	0 %	33.33 %	0 %	Non-Coding
128	NC_009727	CAAGAG	2	12	2064541	2064552	50 %	0 %	33.33 %	16.67 %	Non-Coding
129	NC_009727	TATAAC	2	12	2090742	2090753	50 %	33.33 %	0 %	16.67 %	Non-Coding
130	NC_009727	ATACAA	2	12	2131262	2131273	66.67 %	16.67 %	0 %	16.67 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.