MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Sinorhizobium medicae WSM419 plasmid pSMED02

Total Repeats: 73

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009621	TCCGCG	2	12	1008	1019	0 %	16.67 %	33.33 %	50 %	Non-Coding
2	NC_009621	CCTGTC	2	12	32811	32822	0 %	33.33 %	16.67 %	50 %	Non-Coding
3	NC_009621	GCGCAG	2	12	40259	40270	16.67 %	0 %	50 %	33.33 %	Non-Coding
4	NC_009621	CTTCGG	2	12	81789	81800	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
5	NC_009621	CGACAC	3	18	158261	158278	33.33 %	0 %	16.67 %	50 %	Non-Coding
6	NC_009621	CCAGCG	2	12	159076	159087	16.67 %	0 %	33.33 %	50 %	Non-Coding
7	NC_009621	GCCGCT	2	12	201168	201179	0 %	16.67 %	33.33 %	50 %	Non-Coding
8	NC_009621	GGCCGC	2	12	207616	207627	0 %	0 %	50 %	50 %	Non-Coding
9	NC_009621	TCCACC	2	12	211362	211373	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
10	NC_009621	TACATT	2	12	261756	261767	33.33 %	50 %	0 %	16.67 %	Non-Coding
11	NC_009621	GCCCGG	2	12	311845	311856	0 %	0 %	50 %	50 %	Non-Coding
12	NC_009621	CTCGTG	2	12	363642	363653	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
13	NC_009621	CAAGCG	2	12	392728	392739	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
14	NC_009621	GTGTCG	2	12	446544	446555	0 %	33.33 %	50 %	16.67 %	Non-Coding
15	NC_009621	CGAGGT	2	12	446998	447009	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
16	NC_009621	GGACAA	2	12	453933	453944	50 %	0 %	33.33 %	16.67 %	Non-Coding
17	NC_009621	TGGGGT	2	12	493907	493918	0 %	33.33 %	66.67 %	0 %	Non-Coding
18	NC_009621	TTCGAT	2	12	508164	508175	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
19	NC_009621	GCAGTG	2	12	513498	513509	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
20	NC_009621	AAGCGG	2	12	537036	537047	33.33 %	0 %	50 %	16.67 %	Non-Coding
21	NC_009621	CATTGC	2	12	576596	576607	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
22	NC_009621	GCCATC	2	12	604625	604636	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
23	NC_009621	TAGGCA	3	18	605120	605137	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
24	NC_009621	AAAGGC	2	12	605160	605171	50 %	0 %	33.33 %	16.67 %	Non-Coding
25	NC_009621	AAGCGA	2	12	610558	610569	50 %	0 %	33.33 %	16.67 %	Non-Coding
26	NC_009621	GCCGTT	2	12	638110	638121	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
27	NC_009621	CTCATT	2	12	640813	640824	16.67 %	50 %	0 %	33.33 %	Non-Coding
28	NC_009621	CATGAC	2	12	646633	646644	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
29	NC_009621	GCACAG	2	12	678874	678885	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
30	NC_009621	ATTGCC	2	12	687592	687603	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
31	NC_009621	CGGAGG	2	12	691343	691354	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
32	NC_009621	GAAGGT	2	12	698012	698023	33.33 %	16.67 %	50 %	0 %	Non-Coding
33	NC_009621	GGCGTG	2	12	704543	704554	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
34	NC_009621	CGCGGG	2	12	704909	704920	0 %	0 %	66.67 %	33.33 %	Non-Coding
35	NC_009621	GTTGGT	2	12	705794	705805	0 %	50 %	50 %	0 %	Non-Coding
36	NC_009621	AACTGC	2	12	723381	723392	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
37	NC_009621	CAGCGC	2	12	729459	729470	16.67 %	0 %	33.33 %	50 %	Non-Coding
38	NC_009621	CACTCT	2	12	777826	777837	16.67 %	33.33 %	0 %	50 %	Non-Coding
39	NC_009621	AGGCCC	2	12	782435	782446	16.67 %	0 %	33.33 %	50 %	Non-Coding
40	NC_009621	CGACGG	2	12	863246	863257	16.67 %	0 %	50 %	33.33 %	Non-Coding
41	NC_009621	TCCGGA	2	12	882640	882651	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
42	NC_009621	TGCAAC	2	12	890202	890213	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
43	NC_009621	TTTCTG	2	12	902790	902801	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
44	NC_009621	AGCGCG	2	12	905473	905484	16.67 %	0 %	50 %	33.33 %	Non-Coding
45	NC_009621	GCGACA	2	12	918082	918093	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
46	NC_009621	CAGCGT	2	12	919062	919073	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
47	NC_009621	CGGTCG	2	12	921176	921187	0 %	16.67 %	50 %	33.33 %	Non-Coding
48	NC_009621	GCGATT	2	12	940242	940253	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
49	NC_009621	AAAATC	2	12	947387	947398	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
50	NC_009621	GCGTTG	2	12	959771	959782	0 %	33.33 %	50 %	16.67 %	Non-Coding
51	NC_009621	CGTCAT	2	12	967315	967326	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
52	NC_009621	CAGATC	2	12	967638	967649	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
53	NC_009621	TAACCA	2	12	970189	970200	50 %	16.67 %	0 %	33.33 %	Non-Coding
54	NC_009621	CTTGCG	2	12	973603	973614	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
55	NC_009621	CCGGCA	2	12	982798	982809	16.67 %	0 %	33.33 %	50 %	Non-Coding
56	NC_009621	GATGAC	2	12	988876	988887	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
57	NC_009621	GCGATT	2	12	996768	996779	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
58	NC_009621	GCTTCG	2	12	1007123	1007134	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
59	NC_009621	TCGTTG	2	12	1078623	1078634	0 %	50 %	33.33 %	16.67 %	Non-Coding
60	NC_009621	GGTACC	2	12	1094454	1094465	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
61	NC_009621	CGGCCC	2	12	1095321	1095332	0 %	0 %	33.33 %	66.67 %	Non-Coding
62	NC_009621	CGGCGC	2	12	1096436	1096447	0 %	0 %	50 %	50 %	Non-Coding
63	NC_009621	CGAGAA	2	12	1103438	1103449	50 %	0 %	33.33 %	16.67 %	Non-Coding
64	NC_009621	CGCGCT	2	12	1112433	1112444	0 %	16.67 %	33.33 %	50 %	Non-Coding
65	NC_009621	CAGCTC	2	12	1115958	1115969	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
66	NC_009621	GCGCCG	2	12	1116084	1116095	0 %	0 %	50 %	50 %	Non-Coding
67	NC_009621	ATGCAA	2	12	1116285	1116296	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
68	NC_009621	TGCGAC	3	18	1147729	1147746	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
69	NC_009621	GGCCGC	2	12	1177231	1177242	0 %	0 %	50 %	50 %	Non-Coding
70	NC_009621	CCCTCG	2	12	1216164	1216175	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
71	NC_009621	CCCAAG	2	12	1220833	1220844	33.33 %	0 %	16.67 %	50 %	Non-Coding
72	NC_009621	CATACC	2	12	1239626	1239637	33.33 %	16.67 %	0 %	50 %	Non-Coding
73	NC_009621	TCGCCG	2	12	1240687	1240698	0 %	16.67 %	33.33 %	50 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.