MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Sinorhizobium medicae WSM419 plasmid pSMED01

Total Repeats: 42

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009620	TCATGT	2	12	19238	19249	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
2	NC_009620	CATTCT	2	12	43197	43208	16.67 %	50 %	0 %	33.33 %	Non-Coding
3	NC_009620	CCTATG	2	12	66405	66416	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
4	NC_009620	TTTCGA	2	12	92633	92644	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
5	NC_009620	TTCTGG	2	12	201063	201074	0 %	50 %	33.33 %	16.67 %	Non-Coding
6	NC_009620	CCCGCT	2	12	215939	215950	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
7	NC_009620	CAGAGC	2	12	284564	284575	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
8	NC_009620	CGGCCC	2	12	315186	315197	0 %	0 %	33.33 %	66.67 %	Non-Coding
9	NC_009620	TTCAGC	2	12	340362	340373	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
10	NC_009620	GCCCGG	2	12	342196	342207	0 %	0 %	50 %	50 %	Non-Coding
11	NC_009620	GTTGCC	2	12	536809	536820	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
12	NC_009620	CGTCTC	2	12	550192	550203	0 %	33.33 %	16.67 %	50 %	Non-Coding
13	NC_009620	CCGCTC	2	12	633948	633959	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
14	NC_009620	GATCCG	2	12	662740	662751	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
15	NC_009620	GCCTGT	2	12	726306	726317	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
16	NC_009620	CCGCGC	2	12	774151	774162	0 %	0 %	33.33 %	66.67 %	Non-Coding
17	NC_009620	TGAAGG	2	12	810851	810862	33.33 %	16.67 %	50 %	0 %	Non-Coding
18	NC_009620	CTTTTT	2	12	816836	816847	0 %	83.33 %	0 %	16.67 %	Non-Coding
19	NC_009620	GAGCGA	2	12	831868	831879	33.33 %	0 %	50 %	16.67 %	Non-Coding
20	NC_009620	AACTTG	2	12	865088	865099	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
21	NC_009620	CCGCGC	2	12	865608	865619	0 %	0 %	33.33 %	66.67 %	Non-Coding
22	NC_009620	GCCTCG	2	12	883736	883747	0 %	16.67 %	33.33 %	50 %	Non-Coding
23	NC_009620	GAAGGC	2	12	913700	913711	33.33 %	0 %	50 %	16.67 %	Non-Coding
24	NC_009620	AGCGCC	2	12	939736	939747	16.67 %	0 %	33.33 %	50 %	Non-Coding
25	NC_009620	GGAATC	2	12	945410	945421	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
26	NC_009620	ATGGCG	2	12	1058993	1059004	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
27	NC_009620	TGAAAA	2	12	1060001	1060012	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
28	NC_009620	GCCGCG	2	12	1068934	1068945	0 %	0 %	50 %	50 %	Non-Coding
29	NC_009620	CGCGAG	2	12	1133647	1133658	16.67 %	0 %	50 %	33.33 %	Non-Coding
30	NC_009620	GCGCCC	2	12	1135307	1135318	0 %	0 %	33.33 %	66.67 %	Non-Coding
31	NC_009620	GCTCGG	2	12	1138258	1138269	0 %	16.67 %	50 %	33.33 %	Non-Coding
32	NC_009620	TCAAAG	2	12	1230208	1230219	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
33	NC_009620	CGCTCC	2	12	1271900	1271911	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
34	NC_009620	CAGCGC	2	12	1294557	1294568	16.67 %	0 %	33.33 %	50 %	Non-Coding
35	NC_009620	GCCATC	2	12	1301389	1301400	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
36	NC_009620	GAAAGC	2	12	1302718	1302729	50 %	0 %	33.33 %	16.67 %	Non-Coding
37	NC_009620	TGCGAG	2	12	1341536	1341547	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
38	NC_009620	TGAGCG	2	12	1341558	1341569	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
39	NC_009620	CTGTTC	2	12	1393428	1393439	0 %	50 %	16.67 %	33.33 %	Non-Coding
40	NC_009620	CGCGAG	2	12	1465544	1465555	16.67 %	0 %	50 %	33.33 %	Non-Coding
41	NC_009620	TCGCCC	2	12	1540780	1540791	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
42	NC_009620	GCCTGG	2	12	1552919	1552930	0 %	16.67 %	50 %	33.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.