MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Haemophilus influenzae PittEE chromosome

Total Repeats: 155

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009566	TTAGTG	2	12	914	925	16.67 %	50 %	33.33 %	0 %	Non-Coding
2	NC_009566	AAAATA	2	12	52234	52245	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_009566	AAGTAA	2	12	59138	59149	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
4	NC_009566	AATTTT	2	12	67743	67754	33.33 %	66.67 %	0 %	0 %	Non-Coding
5	NC_009566	CCCAAG	2	12	71570	71581	33.33 %	0 %	16.67 %	50 %	Non-Coding
6	NC_009566	TGTTTT	2	12	146480	146491	0 %	83.33 %	16.67 %	0 %	Non-Coding
7	NC_009566	AATAAG	2	12	163415	163426	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
8	NC_009566	TAAAAA	2	12	176199	176210	83.33 %	16.67 %	0 %	0 %	Non-Coding
9	NC_009566	TATTTT	2	12	176241	176252	16.67 %	83.33 %	0 %	0 %	Non-Coding
10	NC_009566	TTATTT	2	12	198461	198472	16.67 %	83.33 %	0 %	0 %	Non-Coding
11	NC_009566	CATAAA	2	12	225660	225671	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
12	NC_009566	TCCTCT	2	12	240780	240791	0 %	50 %	0 %	50 %	Non-Coding
13	NC_009566	AAAAAG	2	12	260476	260487	83.33 %	0 %	16.67 %	0 %	Non-Coding
14	NC_009566	ATTTTT	2	12	274755	274766	16.67 %	83.33 %	0 %	0 %	Non-Coding
15	NC_009566	ACCTTA	2	12	295905	295916	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
16	NC_009566	ACGTAA	2	12	314714	314725	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
17	NC_009566	ATTTTT	2	12	336223	336234	16.67 %	83.33 %	0 %	0 %	Non-Coding
18	NC_009566	TCTTTC	2	12	343381	343392	0 %	66.67 %	0 %	33.33 %	Non-Coding
19	NC_009566	ATTACT	2	12	346716	346727	33.33 %	50 %	0 %	16.67 %	Non-Coding
20	NC_009566	AAATTA	2	12	347937	347948	66.67 %	33.33 %	0 %	0 %	Non-Coding
21	NC_009566	CAAAAA	2	12	348379	348390	83.33 %	0 %	0 %	16.67 %	Non-Coding
22	NC_009566	GGCAAC	2	12	354810	354821	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
23	NC_009566	CGAAGG	2	12	377122	377133	33.33 %	0 %	50 %	16.67 %	Non-Coding
24	NC_009566	GGGGTT	2	12	377232	377243	0 %	33.33 %	66.67 %	0 %	Non-Coding
25	NC_009566	AGCGAA	2	12	378670	378681	50 %	0 %	33.33 %	16.67 %	Non-Coding
26	NC_009566	TGAAAT	2	12	380531	380542	50 %	33.33 %	16.67 %	0 %	Non-Coding
27	NC_009566	CGAAGG	2	12	410266	410277	33.33 %	0 %	50 %	16.67 %	Non-Coding
28	NC_009566	GGGGTT	2	12	410376	410387	0 %	33.33 %	66.67 %	0 %	Non-Coding
29	NC_009566	AGCGAA	2	12	411814	411825	50 %	0 %	33.33 %	16.67 %	Non-Coding
30	NC_009566	TGAAAT	2	12	413675	413686	50 %	33.33 %	16.67 %	0 %	Non-Coding
31	NC_009566	ATACCA	2	12	442146	442157	50 %	16.67 %	0 %	33.33 %	Non-Coding
32	NC_009566	ATAAAA	2	12	455546	455557	83.33 %	16.67 %	0 %	0 %	Non-Coding
33	NC_009566	AGCAGA	2	12	464059	464070	50 %	0 %	33.33 %	16.67 %	Non-Coding
34	NC_009566	AGCAGA	2	12	464482	464493	50 %	0 %	33.33 %	16.67 %	Non-Coding
35	NC_009566	AGCAGA	2	12	464905	464916	50 %	0 %	33.33 %	16.67 %	Non-Coding
36	NC_009566	AATACG	2	12	465344	465355	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
37	NC_009566	GATAGT	2	12	465887	465898	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
38	NC_009566	AAAAAT	2	12	479341	479352	83.33 %	16.67 %	0 %	0 %	Non-Coding
39	NC_009566	AATTTT	2	12	511674	511685	33.33 %	66.67 %	0 %	0 %	Non-Coding
40	NC_009566	TGCGCC	2	12	515513	515524	0 %	16.67 %	33.33 %	50 %	Non-Coding
41	NC_009566	GTTTTT	2	12	517312	517323	0 %	83.33 %	16.67 %	0 %	Non-Coding
42	NC_009566	TTTTCA	2	12	527476	527487	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
43	NC_009566	CGAAGG	2	12	533283	533294	33.33 %	0 %	50 %	16.67 %	Non-Coding
44	NC_009566	GGGGTT	2	12	533393	533404	0 %	33.33 %	66.67 %	0 %	Non-Coding
45	NC_009566	TTTAAA	2	12	534522	534533	50 %	50 %	0 %	0 %	Non-Coding
46	NC_009566	AGCGAA	2	12	535067	535078	50 %	0 %	33.33 %	16.67 %	Non-Coding
47	NC_009566	TGAAAT	2	12	537041	537052	50 %	33.33 %	16.67 %	0 %	Non-Coding
48	NC_009566	GTTTTT	2	12	538294	538305	0 %	83.33 %	16.67 %	0 %	Non-Coding
49	NC_009566	ATTAGA	2	12	541113	541124	50 %	33.33 %	16.67 %	0 %	Non-Coding
50	NC_009566	TGATGC	2	12	544402	544413	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
51	NC_009566	GGCGCA	2	12	591715	591726	16.67 %	0 %	50 %	33.33 %	Non-Coding
52	NC_009566	CTTGAT	2	12	593282	593293	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
53	NC_009566	CAATCG	2	12	598149	598160	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
54	NC_009566	AAAGTA	2	12	625206	625217	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
55	NC_009566	AAGTAA	2	12	625733	625744	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
56	NC_009566	CTTTTC	2	12	649306	649317	0 %	66.67 %	0 %	33.33 %	Non-Coding
57	NC_009566	CTTTTT	2	12	656841	656852	0 %	83.33 %	0 %	16.67 %	Non-Coding
58	NC_009566	CGAAGG	2	12	676014	676025	33.33 %	0 %	50 %	16.67 %	Non-Coding
59	NC_009566	GGGGTT	2	12	676124	676135	0 %	33.33 %	66.67 %	0 %	Non-Coding
60	NC_009566	TTTAAA	2	12	677253	677264	50 %	50 %	0 %	0 %	Non-Coding
61	NC_009566	AGCGAA	2	12	677803	677814	50 %	0 %	33.33 %	16.67 %	Non-Coding
62	NC_009566	TGAAAT	2	12	679777	679788	50 %	33.33 %	16.67 %	0 %	Non-Coding
63	NC_009566	TATAAA	2	12	681039	681050	66.67 %	33.33 %	0 %	0 %	Non-Coding
64	NC_009566	TTTTTA	2	12	683331	683342	16.67 %	83.33 %	0 %	0 %	Non-Coding
65	NC_009566	TTTATT	2	12	691031	691042	16.67 %	83.33 %	0 %	0 %	Non-Coding
66	NC_009566	CTATTG	2	12	691445	691456	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
67	NC_009566	AATCGT	2	12	691816	691827	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
68	NC_009566	TTTAGA	2	12	714211	714222	33.33 %	50 %	16.67 %	0 %	Non-Coding
69	NC_009566	AAAATT	2	12	730783	730794	66.67 %	33.33 %	0 %	0 %	Non-Coding
70	NC_009566	TTTTGT	2	12	785650	785661	0 %	83.33 %	16.67 %	0 %	Non-Coding
71	NC_009566	AGAATT	2	12	788935	788946	50 %	33.33 %	16.67 %	0 %	Non-Coding
72	NC_009566	ACGCCA	2	12	819713	819724	33.33 %	0 %	16.67 %	50 %	Non-Coding
73	NC_009566	TGGCAA	2	12	837011	837022	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
74	NC_009566	CAAAGA	2	12	837359	837370	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
75	NC_009566	GCACAA	2	12	908272	908283	50 %	0 %	16.67 %	33.33 %	Non-Coding
76	NC_009566	ATAGAA	2	12	919418	919429	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
77	NC_009566	AAAGCA	2	12	925799	925810	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
78	NC_009566	TGAAAT	2	12	926074	926085	50 %	33.33 %	16.67 %	0 %	Non-Coding
79	NC_009566	CTTGAG	2	12	926285	926296	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
80	NC_009566	ACTTTT	2	12	935334	935345	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
81	NC_009566	AACCAA	2	12	952914	952925	66.67 %	0 %	0 %	33.33 %	Non-Coding
82	NC_009566	AATTTA	2	12	971906	971917	50 %	50 %	0 %	0 %	Non-Coding
83	NC_009566	TAAAAT	2	12	973056	973067	66.67 %	33.33 %	0 %	0 %	Non-Coding
84	NC_009566	TTAATC	2	12	986144	986155	33.33 %	50 %	0 %	16.67 %	Non-Coding
85	NC_009566	AAATTG	2	12	986483	986494	50 %	33.33 %	16.67 %	0 %	Non-Coding
86	NC_009566	TTTCGC	2	12	1002329	1002340	0 %	50 %	16.67 %	33.33 %	Non-Coding
87	NC_009566	AAAAAT	2	12	1035249	1035260	83.33 %	16.67 %	0 %	0 %	Non-Coding
88	NC_009566	TAAAAT	2	12	1044565	1044576	66.67 %	33.33 %	0 %	0 %	Non-Coding
89	NC_009566	ATATGA	2	12	1050253	1050264	50 %	33.33 %	16.67 %	0 %	Non-Coding
90	NC_009566	AGAAAA	2	12	1060597	1060608	83.33 %	0 %	16.67 %	0 %	Non-Coding
91	NC_009566	TAAATA	2	12	1095552	1095563	66.67 %	33.33 %	0 %	0 %	Non-Coding
92	NC_009566	TCATAA	2	12	1096708	1096719	50 %	33.33 %	0 %	16.67 %	Non-Coding
93	NC_009566	ATTTTT	2	12	1098242	1098253	16.67 %	83.33 %	0 %	0 %	Non-Coding
94	NC_009566	GGAAGT	2	12	1098255	1098266	33.33 %	16.67 %	50 %	0 %	Non-Coding
95	NC_009566	TTTATA	2	12	1127756	1127767	33.33 %	66.67 %	0 %	0 %	Non-Coding
96	NC_009566	GGAAAA	2	12	1132603	1132614	66.67 %	0 %	33.33 %	0 %	Non-Coding
97	NC_009566	ATCTAA	2	12	1176401	1176412	50 %	33.33 %	0 %	16.67 %	Non-Coding
98	NC_009566	AAGCCA	2	12	1180491	1180502	50 %	0 %	16.67 %	33.33 %	Non-Coding
99	NC_009566	AAAGAA	2	12	1181069	1181080	83.33 %	0 %	16.67 %	0 %	Non-Coding
100	NC_009566	TCACGT	2	12	1181406	1181417	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
101	NC_009566	TTACAA	2	12	1191195	1191206	50 %	33.33 %	0 %	16.67 %	Non-Coding
102	NC_009566	ACATAT	2	12	1196765	1196776	50 %	33.33 %	0 %	16.67 %	Non-Coding
103	NC_009566	TTTAAT	2	12	1214479	1214490	33.33 %	66.67 %	0 %	0 %	Non-Coding
104	NC_009566	AGCAAA	2	12	1214737	1214748	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
105	NC_009566	ATTGTT	2	12	1214768	1214779	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
106	NC_009566	AGCAAA	2	12	1218706	1218717	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
107	NC_009566	TTCTGC	2	12	1255360	1255371	0 %	50 %	16.67 %	33.33 %	Non-Coding
108	NC_009566	TTGTTT	2	12	1256098	1256109	0 %	83.33 %	16.67 %	0 %	Non-Coding
109	NC_009566	AAAGTA	2	12	1272532	1272543	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
110	NC_009566	TTTTAC	2	12	1280427	1280438	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
111	NC_009566	AAGAAT	2	12	1321443	1321454	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
112	NC_009566	GATAAA	2	12	1347657	1347668	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
113	NC_009566	GAATAT	2	12	1362159	1362170	50 %	33.33 %	16.67 %	0 %	Non-Coding
114	NC_009566	CTAATA	2	12	1374047	1374058	50 %	33.33 %	0 %	16.67 %	Non-Coding
115	NC_009566	TATAAA	2	12	1378097	1378108	66.67 %	33.33 %	0 %	0 %	Non-Coding
116	NC_009566	ATCATT	2	12	1392666	1392677	33.33 %	50 %	0 %	16.67 %	Non-Coding
117	NC_009566	AGTTCT	2	12	1407479	1407490	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
118	NC_009566	GGTGCG	2	12	1451583	1451594	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
119	NC_009566	TGGCAT	2	12	1493695	1493706	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
120	NC_009566	TCCCCT	2	12	1506955	1506966	0 %	33.33 %	0 %	66.67 %	Non-Coding
121	NC_009566	ATTAGG	2	12	1533064	1533075	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
122	NC_009566	ATTTCA	2	12	1547082	1547093	33.33 %	50 %	0 %	16.67 %	Non-Coding
123	NC_009566	AAGTTA	2	12	1548008	1548019	50 %	33.33 %	16.67 %	0 %	Non-Coding
124	NC_009566	TTTATT	2	12	1556598	1556609	16.67 %	83.33 %	0 %	0 %	Non-Coding
125	NC_009566	AAAATG	2	12	1576125	1576136	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
126	NC_009566	CTTTAG	2	12	1578451	1578462	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
127	NC_009566	AAAAGA	2	12	1605088	1605099	83.33 %	0 %	16.67 %	0 %	Non-Coding
128	NC_009566	ACCTTT	2	12	1609499	1609510	16.67 %	50 %	0 %	33.33 %	Non-Coding
129	NC_009566	TTCGAT	2	12	1609757	1609768	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
130	NC_009566	TCAAAA	2	12	1619859	1619870	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
131	NC_009566	CAAAAG	2	12	1625828	1625839	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
132	NC_009566	CGTTAT	2	12	1627985	1627996	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
133	NC_009566	ATGGTT	2	12	1633042	1633053	16.67 %	50 %	33.33 %	0 %	Non-Coding
134	NC_009566	GTAAAA	2	12	1653096	1653107	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
135	NC_009566	TTATTT	2	12	1660719	1660730	16.67 %	83.33 %	0 %	0 %	Non-Coding
136	NC_009566	ATTTCA	2	12	1676969	1676980	33.33 %	50 %	0 %	16.67 %	Non-Coding
137	NC_009566	CTTTCG	2	12	1678942	1678953	0 %	50 %	16.67 %	33.33 %	Non-Coding
138	NC_009566	TTAAAT	2	12	1679493	1679504	50 %	50 %	0 %	0 %	Non-Coding
139	NC_009566	AACCCC	2	12	1680627	1680638	33.33 %	0 %	0 %	66.67 %	Non-Coding
140	NC_009566	GCCTTC	2	12	1680736	1680747	0 %	33.33 %	16.67 %	50 %	Non-Coding
141	NC_009566	AAAAGA	2	12	1684012	1684023	83.33 %	0 %	16.67 %	0 %	Non-Coding
142	NC_009566	AAAAAC	2	12	1686627	1686638	83.33 %	0 %	0 %	16.67 %	Non-Coding
143	NC_009566	TTGCAT	2	12	1691380	1691391	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
144	NC_009566	ATTGAA	2	12	1691850	1691861	50 %	33.33 %	16.67 %	0 %	Non-Coding
145	NC_009566	ATCGAG	2	12	1693904	1693915	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
146	NC_009566	AACAGA	2	12	1699809	1699820	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
147	NC_009566	CAACGC	2	12	1775573	1775584	33.33 %	0 %	16.67 %	50 %	Non-Coding
148	NC_009566	GTGAAA	2	12	1776783	1776794	50 %	16.67 %	33.33 %	0 %	Non-Coding
149	NC_009566	TTATTT	2	12	1778008	1778019	16.67 %	83.33 %	0 %	0 %	Non-Coding
150	NC_009566	AAAAAC	2	12	1798439	1798450	83.33 %	0 %	0 %	16.67 %	Non-Coding
151	NC_009566	ATTTCA	2	12	1799727	1799738	33.33 %	50 %	0 %	16.67 %	Non-Coding
152	NC_009566	CTTTCG	2	12	1801586	1801597	0 %	50 %	16.67 %	33.33 %	Non-Coding
153	NC_009566	AACCCC	2	12	1803026	1803037	33.33 %	0 %	0 %	66.67 %	Non-Coding
154	NC_009566	GCCTTC	2	12	1803135	1803146	0 %	33.33 %	16.67 %	50 %	Non-Coding
155	NC_009566	AATATC	2	12	1812760	1812771	50 %	33.33 %	0 %	16.67 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.