MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Mycobacterium tuberculosis H37Ra chromosome

Total Repeats: 126

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009525	ACCGCG	2	12	32447	32458	16.67 %	0 %	33.33 %	50 %	Non-Coding
2	NC_009525	CGTCGG	2	12	68094	68105	0 %	16.67 %	50 %	33.33 %	Non-Coding
3	NC_009525	CAACGG	2	12	77579	77590	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
4	NC_009525	TCACCT	2	12	81754	81765	16.67 %	33.33 %	0 %	50 %	Non-Coding
5	NC_009525	GCGGTG	2	12	106102	106113	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
6	NC_009525	CTCGGT	2	12	150733	150744	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
7	NC_009525	GCCGCG	2	12	182292	182303	0 %	0 %	50 %	50 %	Non-Coding
8	NC_009525	ACAGCC	2	12	219840	219851	33.33 %	0 %	16.67 %	50 %	Non-Coding
9	NC_009525	CCCCGA	2	12	294992	295003	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
10	NC_009525	AGATTC	2	12	331725	331736	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
11	NC_009525	GGTCGC	2	12	343423	343434	0 %	16.67 %	50 %	33.33 %	Non-Coding
12	NC_009525	CCGATA	2	12	477789	477800	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
13	NC_009525	ATAGTC	2	12	544282	544293	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
14	NC_009525	ACCAGT	2	12	592309	592320	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
15	NC_009525	CGCCGT	2	12	721235	721246	0 %	16.67 %	33.33 %	50 %	Non-Coding
16	NC_009525	CGCGGG	2	12	831128	831139	0 %	0 %	66.67 %	33.33 %	Non-Coding
17	NC_009525	CCGGCG	2	12	864465	864476	0 %	0 %	50 %	50 %	Non-Coding
18	NC_009525	ACCGGG	2	12	871186	871197	16.67 %	0 %	50 %	33.33 %	Non-Coding
19	NC_009525	GCGGCC	2	12	909434	909445	0 %	0 %	50 %	50 %	Non-Coding
20	NC_009525	ACAGCA	2	12	910807	910818	50 %	0 %	16.67 %	33.33 %	Non-Coding
21	NC_009525	CTGGGT	2	12	925646	925657	0 %	33.33 %	50 %	16.67 %	Non-Coding
22	NC_009525	CAGTCG	2	12	933384	933395	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
23	NC_009525	TCGGGT	2	12	966885	966896	0 %	33.33 %	50 %	16.67 %	Non-Coding
24	NC_009525	CAACGG	2	12	1030666	1030677	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
25	NC_009525	GATCGA	2	12	1030717	1030728	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
26	NC_009525	GACTGC	2	12	1035121	1035132	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
27	NC_009525	CGCCGG	2	12	1053985	1053996	0 %	0 %	50 %	50 %	Non-Coding
28	NC_009525	GGCGCA	2	12	1095771	1095782	16.67 %	0 %	50 %	33.33 %	Non-Coding
29	NC_009525	CAATGC	2	12	1124958	1124969	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
30	NC_009525	TTGGTG	2	12	1153094	1153105	0 %	50 %	50 %	0 %	Non-Coding
31	NC_009525	TTCCGT	2	12	1163787	1163798	0 %	50 %	16.67 %	33.33 %	Non-Coding
32	NC_009525	TAGCCA	2	12	1197558	1197569	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
33	NC_009525	TGGGCG	2	12	1219613	1219624	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
34	NC_009525	AGTTAC	2	12	1223254	1223265	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
35	NC_009525	AGGACG	2	12	1284246	1284257	33.33 %	0 %	50 %	16.67 %	Non-Coding
36	NC_009525	AGGCCA	2	12	1342605	1342616	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
37	NC_009525	TCGACA	2	12	1370054	1370065	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
38	NC_009525	CCGAGT	2	12	1421132	1421143	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
39	NC_009525	CACGCG	2	12	1526315	1526326	16.67 %	0 %	33.33 %	50 %	Non-Coding
40	NC_009525	ATATTC	2	12	1562700	1562711	33.33 %	50 %	0 %	16.67 %	Non-Coding
41	NC_009525	GCCCCT	2	12	1636162	1636173	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
42	NC_009525	GCCCCT	2	12	1639764	1639775	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
43	NC_009525	CGAGTG	2	12	1791625	1791636	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
44	NC_009525	GGCGCC	2	12	1837850	1837861	0 %	0 %	50 %	50 %	Non-Coding
45	NC_009525	TAGCGG	2	12	1928670	1928681	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
46	NC_009525	ACCGCA	2	12	1930607	1930618	33.33 %	0 %	16.67 %	50 %	Non-Coding
47	NC_009525	CGCCGG	2	12	1999741	1999752	0 %	0 %	50 %	50 %	Non-Coding
48	NC_009525	GCTGAA	2	12	2001539	2001550	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
49	NC_009525	GGCGGT	2	12	2001731	2001742	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
50	NC_009525	GGTGAT	2	12	2051675	2051686	16.67 %	33.33 %	50 %	0 %	Non-Coding
51	NC_009525	TTCGGC	2	12	2065584	2065595	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
52	NC_009525	AGAGGG	2	12	2085765	2085776	33.33 %	0 %	66.67 %	0 %	Non-Coding
53	NC_009525	GCTGGG	2	12	2154848	2154859	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
54	NC_009525	CGCGAG	2	12	2186461	2186472	16.67 %	0 %	50 %	33.33 %	Non-Coding
55	NC_009525	CGGTTG	2	12	2240844	2240855	0 %	33.33 %	50 %	16.67 %	Non-Coding
56	NC_009525	GCCGCA	2	12	2243749	2243760	16.67 %	0 %	33.33 %	50 %	Non-Coding
57	NC_009525	CGGCTC	2	12	2273062	2273073	0 %	16.67 %	33.33 %	50 %	Non-Coding
58	NC_009525	TGCACT	2	12	2348484	2348495	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
59	NC_009525	ATAGAA	2	12	2376905	2376916	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
60	NC_009525	CTCAAC	2	12	2419482	2419493	33.33 %	16.67 %	0 %	50 %	Non-Coding
61	NC_009525	CAGCTG	2	12	2432007	2432018	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
62	NC_009525	CCGCTG	2	12	2441443	2441454	0 %	16.67 %	33.33 %	50 %	Non-Coding
63	NC_009525	CACCGC	2	12	2449900	2449911	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
64	NC_009525	GCGTCG	2	12	2502272	2502283	0 %	16.67 %	50 %	33.33 %	Non-Coding
65	NC_009525	GCAACC	2	12	2642106	2642117	33.33 %	0 %	16.67 %	50 %	Non-Coding
66	NC_009525	CACGTG	2	12	2727329	2727340	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
67	NC_009525	GAGGTC	2	12	2730941	2730952	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
68	NC_009525	CCGGCA	2	12	2744992	2745003	16.67 %	0 %	33.33 %	50 %	Non-Coding
69	NC_009525	CGCCAC	2	12	2804539	2804550	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
70	NC_009525	TCAAAC	2	12	2806292	2806303	50 %	16.67 %	0 %	33.33 %	Non-Coding
71	NC_009525	GCACCC	2	12	2834362	2834373	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
72	NC_009525	CGACGG	2	12	2882643	2882654	16.67 %	0 %	50 %	33.33 %	Non-Coding
73	NC_009525	GCCCGA	2	12	2889738	2889749	16.67 %	0 %	33.33 %	50 %	Non-Coding
74	NC_009525	GTATTG	2	12	2928175	2928186	16.67 %	50 %	33.33 %	0 %	Non-Coding
75	NC_009525	CCGTTG	2	12	2938111	2938122	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
76	NC_009525	GGCGCC	2	12	2957799	2957810	0 %	0 %	50 %	50 %	Non-Coding
77	NC_009525	CGGAAG	2	12	2965268	2965279	33.33 %	0 %	50 %	16.67 %	Non-Coding
78	NC_009525	CATATT	2	12	3027047	3027058	33.33 %	50 %	0 %	16.67 %	Non-Coding
79	NC_009525	CCGGCA	2	12	3091124	3091135	16.67 %	0 %	33.33 %	50 %	Non-Coding
80	NC_009525	CGTTGC	2	12	3112138	3112149	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
81	NC_009525	GATCTC	2	12	3149142	3149153	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
82	NC_009525	TCGCCG	2	12	3303424	3303435	0 %	16.67 %	33.33 %	50 %	Non-Coding
83	NC_009525	TCGCCG	2	12	3303481	3303492	0 %	16.67 %	33.33 %	50 %	Non-Coding
84	NC_009525	CGCCAC	2	12	3319502	3319513	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
85	NC_009525	GGCCGG	2	12	3325201	3325212	0 %	0 %	66.67 %	33.33 %	Non-Coding
86	NC_009525	CGTAGG	2	12	3393327	3393338	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
87	NC_009525	CGATGC	2	12	3427265	3427276	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
88	NC_009525	TGTACA	2	12	3442510	3442521	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
89	NC_009525	ACCAAC	2	12	3447859	3447870	50 %	0 %	0 %	50 %	Non-Coding
90	NC_009525	CCGTTG	2	12	3469557	3469568	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
91	NC_009525	GCTCCT	2	12	3499934	3499945	0 %	33.33 %	16.67 %	50 %	Non-Coding
92	NC_009525	TCCGCT	2	12	3559167	3559178	0 %	33.33 %	16.67 %	50 %	Non-Coding
93	NC_009525	GTGCCG	2	12	3611535	3611546	0 %	16.67 %	50 %	33.33 %	Non-Coding
94	NC_009525	GCCTCC	2	12	3651027	3651038	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
95	NC_009525	TGTCGA	2	12	3711331	3711342	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
96	NC_009525	GCGCCG	2	12	3746107	3746118	0 %	0 %	50 %	50 %	Non-Coding
97	NC_009525	GCTGCC	2	12	3747039	3747050	0 %	16.67 %	33.33 %	50 %	Non-Coding
98	NC_009525	TGCCGC	2	12	3747170	3747181	0 %	16.67 %	33.33 %	50 %	Non-Coding
99	NC_009525	CGCAGC	2	12	3764505	3764516	16.67 %	0 %	33.33 %	50 %	Non-Coding
100	NC_009525	GCGCAG	2	12	3787531	3787542	16.67 %	0 %	50 %	33.33 %	Non-Coding
101	NC_009525	TGTACA	2	12	3808236	3808247	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
102	NC_009525	TCCTCT	2	12	3888758	3888769	0 %	50 %	0 %	50 %	Non-Coding
103	NC_009525	ACCGCC	3	18	3892544	3892561	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
104	NC_009525	TCGGAG	2	12	3914395	3914406	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
105	NC_009525	CCGCTC	2	12	3918424	3918435	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
106	NC_009525	CGTTGG	2	12	3931064	3931075	0 %	33.33 %	50 %	16.67 %	Non-Coding
107	NC_009525	CGGCCG	2	12	3935204	3935215	0 %	0 %	50 %	50 %	Non-Coding
108	NC_009525	CGACGG	2	12	3944632	3944643	16.67 %	0 %	50 %	33.33 %	Non-Coding
109	NC_009525	CGCCGG	2	12	3944854	3944865	0 %	0 %	50 %	50 %	Non-Coding
110	NC_009525	CGACGG	2	12	3945229	3945240	16.67 %	0 %	50 %	33.33 %	Non-Coding
111	NC_009525	CGCCGG	2	12	3945451	3945462	0 %	0 %	50 %	50 %	Non-Coding
112	NC_009525	CAACGG	2	12	3945883	3945894	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
113	NC_009525	GCCGGC	2	12	3945992	3946003	0 %	0 %	50 %	50 %	Non-Coding
114	NC_009525	CCGGCG	2	12	3946134	3946145	0 %	0 %	50 %	50 %	Non-Coding
115	NC_009525	GGCACC	2	12	3951386	3951397	16.67 %	0 %	33.33 %	50 %	Non-Coding
116	NC_009525	CGCGGG	2	12	3951838	3951849	0 %	0 %	66.67 %	33.33 %	Non-Coding
117	NC_009525	GCCGGT	2	12	3952160	3952171	0 %	16.67 %	50 %	33.33 %	Non-Coding
118	NC_009525	CAACGG	2	12	3953257	3953268	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
119	NC_009525	GGCCGG	2	12	3953632	3953643	0 %	0 %	66.67 %	33.33 %	Non-Coding
120	NC_009525	CGGCGA	2	12	4017313	4017324	16.67 %	0 %	50 %	33.33 %	Non-Coding
121	NC_009525	CGAACA	2	12	4025097	4025108	50 %	0 %	16.67 %	33.33 %	Non-Coding
122	NC_009525	GGCGAG	2	12	4119233	4119244	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
123	NC_009525	GCGCCG	2	12	4159522	4159533	0 %	0 %	50 %	50 %	Non-Coding
124	NC_009525	TGGCGG	2	12	4207574	4207585	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
125	NC_009525	CTCATC	2	12	4275115	4275126	16.67 %	33.33 %	0 %	50 %	Non-Coding
126	NC_009525	GGGTTG	2	12	4332380	4332391	0 %	33.33 %	66.67 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.