MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Sphingomonas wittichii RW1 chromosome

Total Repeats: 131

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009511	TGCCGT	2	12	17256	17267	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
2	NC_009511	GAGGGG	2	12	30383	30394	16.67 %	0 %	83.33 %	0 %	Non-Coding
3	NC_009511	GGGCAT	2	12	39721	39732	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
4	NC_009511	TGCTCG	2	12	82131	82142	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
5	NC_009511	CCTGGG	2	12	82369	82380	0 %	16.67 %	50 %	33.33 %	Non-Coding
6	NC_009511	CAGAAA	2	12	114493	114504	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
7	NC_009511	GCCTTC	2	12	204510	204521	0 %	33.33 %	16.67 %	50 %	Non-Coding
8	NC_009511	GGCCTC	2	12	212922	212933	0 %	16.67 %	33.33 %	50 %	Non-Coding
9	NC_009511	GGGGGA	2	12	292816	292827	16.67 %	0 %	83.33 %	0 %	Non-Coding
10	NC_009511	GGAGAG	2	12	333795	333806	33.33 %	0 %	66.67 %	0 %	Non-Coding
11	NC_009511	GGGGGC	2	12	347609	347620	0 %	0 %	83.33 %	16.67 %	Non-Coding
12	NC_009511	GCGTCG	2	12	363981	363992	0 %	16.67 %	50 %	33.33 %	Non-Coding
13	NC_009511	TCGGCC	2	12	400654	400665	0 %	16.67 %	33.33 %	50 %	Non-Coding
14	NC_009511	GCAGGT	2	12	401330	401341	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
15	NC_009511	GGCCGG	2	12	422485	422496	0 %	0 %	66.67 %	33.33 %	Non-Coding
16	NC_009511	CGCGAT	2	12	454045	454056	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
17	NC_009511	GGCCGG	2	12	569098	569109	0 %	0 %	66.67 %	33.33 %	Non-Coding
18	NC_009511	AAGATG	2	12	572126	572137	50 %	16.67 %	33.33 %	0 %	Non-Coding
19	NC_009511	TCCCCC	2	12	591584	591595	0 %	16.67 %	0 %	83.33 %	Non-Coding
20	NC_009511	GGAGCG	2	12	612529	612540	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
21	NC_009511	GCCCCG	2	12	633005	633016	0 %	0 %	33.33 %	66.67 %	Non-Coding
22	NC_009511	GCTTCT	2	12	687815	687826	0 %	50 %	16.67 %	33.33 %	Non-Coding
23	NC_009511	CTCGAT	2	12	830188	830199	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
24	NC_009511	CCCGGC	2	12	932465	932476	0 %	0 %	33.33 %	66.67 %	Non-Coding
25	NC_009511	CGGCCC	2	12	953037	953048	0 %	0 %	33.33 %	66.67 %	Non-Coding
26	NC_009511	GCGATC	2	12	971173	971184	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
27	NC_009511	ATCGGC	2	12	1149265	1149276	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
28	NC_009511	CCCGCG	2	12	1183314	1183325	0 %	0 %	33.33 %	66.67 %	Non-Coding
29	NC_009511	CCGAGC	2	12	1191172	1191183	16.67 %	0 %	33.33 %	50 %	Non-Coding
30	NC_009511	AGGCGC	2	12	1217282	1217293	16.67 %	0 %	50 %	33.33 %	Non-Coding
31	NC_009511	GCATCC	2	12	1268224	1268235	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
32	NC_009511	GCCGTC	2	12	1329007	1329018	0 %	16.67 %	33.33 %	50 %	Non-Coding
33	NC_009511	ATCGGC	2	12	1376874	1376885	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
34	NC_009511	GACGCC	2	12	1635393	1635404	16.67 %	0 %	33.33 %	50 %	Non-Coding
35	NC_009511	AAGCCC	2	12	1709391	1709402	33.33 %	0 %	16.67 %	50 %	Non-Coding
36	NC_009511	ACCATC	2	12	1723673	1723684	33.33 %	16.67 %	0 %	50 %	Non-Coding
37	NC_009511	CCGGCC	2	12	1820668	1820679	0 %	0 %	33.33 %	66.67 %	Non-Coding
38	NC_009511	CCTGCG	2	12	1943846	1943857	0 %	16.67 %	33.33 %	50 %	Non-Coding
39	NC_009511	TCGCCC	2	12	1975422	1975433	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
40	NC_009511	CGATAT	2	12	1992255	1992266	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
41	NC_009511	CCCCTT	2	12	2006474	2006485	0 %	33.33 %	0 %	66.67 %	Non-Coding
42	NC_009511	GCGAGG	2	12	2034574	2034585	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
43	NC_009511	GGGCGC	2	12	2051402	2051413	0 %	0 %	66.67 %	33.33 %	Non-Coding
44	NC_009511	CGCGAT	2	12	2051682	2051693	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
45	NC_009511	CCGCGC	2	12	2179523	2179534	0 %	0 %	33.33 %	66.67 %	Non-Coding
46	NC_009511	GGAAGA	2	12	2235450	2235461	50 %	0 %	50 %	0 %	Non-Coding
47	NC_009511	CCATGC	2	12	2245505	2245516	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
48	NC_009511	CGCTGG	2	12	2259047	2259058	0 %	16.67 %	50 %	33.33 %	Non-Coding
49	NC_009511	GCGATC	2	12	2300585	2300596	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
50	NC_009511	CGGCGA	2	12	2306036	2306047	16.67 %	0 %	50 %	33.33 %	Non-Coding
51	NC_009511	CCGATG	2	12	2500848	2500859	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
52	NC_009511	TTTCGA	2	12	2611522	2611533	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
53	NC_009511	CCCGTC	2	12	2640650	2640661	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
54	NC_009511	GAGGCT	2	12	2712171	2712182	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
55	NC_009511	TTTCCG	2	12	2764688	2764699	0 %	50 %	16.67 %	33.33 %	Non-Coding
56	NC_009511	CCGGGT	2	12	2814878	2814889	0 %	16.67 %	50 %	33.33 %	Non-Coding
57	NC_009511	GGTCGC	2	12	2846100	2846111	0 %	16.67 %	50 %	33.33 %	Non-Coding
58	NC_009511	TCCCCC	2	12	2866398	2866409	0 %	16.67 %	0 %	83.33 %	Non-Coding
59	NC_009511	CTCTGA	2	12	2899429	2899440	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
60	NC_009511	GCCCAA	2	12	2917169	2917180	33.33 %	0 %	16.67 %	50 %	Non-Coding
61	NC_009511	CAACAT	2	12	2935086	2935097	50 %	16.67 %	0 %	33.33 %	Non-Coding
62	NC_009511	GCCCCT	2	12	2939648	2939659	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
63	NC_009511	ACCGTC	2	12	2957371	2957382	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
64	NC_009511	TGGCGC	2	12	2972976	2972987	0 %	16.67 %	50 %	33.33 %	Non-Coding
65	NC_009511	CGCGGT	2	12	3070558	3070569	0 %	16.67 %	50 %	33.33 %	Non-Coding
66	NC_009511	GCCCGC	2	12	3072329	3072340	0 %	0 %	33.33 %	66.67 %	Non-Coding
67	NC_009511	CCGCGC	2	12	3089289	3089300	0 %	0 %	33.33 %	66.67 %	Non-Coding
68	NC_009511	CCTGAT	2	12	3109318	3109329	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
69	NC_009511	AGACCC	2	12	3117875	3117886	33.33 %	0 %	16.67 %	50 %	Non-Coding
70	NC_009511	GCCCCG	2	12	3140939	3140950	0 %	0 %	33.33 %	66.67 %	Non-Coding
71	NC_009511	GGCGCG	2	12	3140991	3141002	0 %	0 %	66.67 %	33.33 %	Non-Coding
72	NC_009511	GCCCTC	2	12	3141555	3141566	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
73	NC_009511	TCGCCC	2	12	3141628	3141639	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
74	NC_009511	CTGCGG	2	12	3221898	3221909	0 %	16.67 %	50 %	33.33 %	Non-Coding
75	NC_009511	TCCGGC	2	12	3225619	3225630	0 %	16.67 %	33.33 %	50 %	Non-Coding
76	NC_009511	TTCGAT	2	12	3242014	3242025	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
77	NC_009511	GGCCGC	2	12	3242034	3242045	0 %	0 %	50 %	50 %	Non-Coding
78	NC_009511	TTGCGG	2	12	3265941	3265952	0 %	33.33 %	50 %	16.67 %	Non-Coding
79	NC_009511	TGCCCT	2	12	3268051	3268062	0 %	33.33 %	16.67 %	50 %	Non-Coding
80	NC_009511	GGGGAG	2	12	3280625	3280636	16.67 %	0 %	83.33 %	0 %	Non-Coding
81	NC_009511	GCCGTC	2	12	3295681	3295692	0 %	16.67 %	33.33 %	50 %	Non-Coding
82	NC_009511	CCGAGG	2	12	3300262	3300273	16.67 %	0 %	50 %	33.33 %	Non-Coding
83	NC_009511	GCTGGT	2	12	3300410	3300421	0 %	33.33 %	50 %	16.67 %	Non-Coding
84	NC_009511	CGGCCG	2	12	3425927	3425938	0 %	0 %	50 %	50 %	Non-Coding
85	NC_009511	GAACGG	2	12	3436852	3436863	33.33 %	0 %	50 %	16.67 %	Non-Coding
86	NC_009511	GCCGAT	2	12	3443492	3443503	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
87	NC_009511	ATGGCC	2	12	3487192	3487203	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
88	NC_009511	TATCCA	2	12	3514039	3514050	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
89	NC_009511	ATTCAT	2	12	3735354	3735365	33.33 %	50 %	0 %	16.67 %	Non-Coding
90	NC_009511	CGGATG	2	12	3768868	3768879	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
91	NC_009511	AGGGGT	2	12	3783409	3783420	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
92	NC_009511	GGACGG	2	12	3795220	3795231	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
93	NC_009511	GGATCG	2	12	3802974	3802985	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
94	NC_009511	TCGCCG	2	12	3859530	3859541	0 %	16.67 %	33.33 %	50 %	Non-Coding
95	NC_009511	GCCTTT	2	12	3887749	3887760	0 %	50 %	16.67 %	33.33 %	Non-Coding
96	NC_009511	TCTCAC	2	12	3933034	3933045	16.67 %	33.33 %	0 %	50 %	Non-Coding
97	NC_009511	CCCGCG	2	12	3971677	3971688	0 %	0 %	33.33 %	66.67 %	Non-Coding
98	NC_009511	CATTTT	2	12	4011745	4011756	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
99	NC_009511	GGGCCG	2	12	4039841	4039852	0 %	0 %	66.67 %	33.33 %	Non-Coding
100	NC_009511	CTCGAT	2	12	4041128	4041139	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
101	NC_009511	TGCGGG	2	12	4041722	4041733	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
102	NC_009511	GGAGAG	2	12	4093431	4093442	33.33 %	0 %	66.67 %	0 %	Non-Coding
103	NC_009511	GGAAAG	2	12	4120620	4120631	50 %	0 %	50 %	0 %	Non-Coding
104	NC_009511	CGACCG	2	12	4128669	4128680	16.67 %	0 %	33.33 %	50 %	Non-Coding
105	NC_009511	TCGGCG	2	12	4134411	4134422	0 %	16.67 %	50 %	33.33 %	Non-Coding
106	NC_009511	CGCTGC	2	12	4262820	4262831	0 %	16.67 %	33.33 %	50 %	Non-Coding
107	NC_009511	GCTGCG	2	12	4285288	4285299	0 %	16.67 %	50 %	33.33 %	Non-Coding
108	NC_009511	CGGAAG	2	12	4311360	4311371	33.33 %	0 %	50 %	16.67 %	Non-Coding
109	NC_009511	GGCCGG	2	12	4313136	4313147	0 %	0 %	66.67 %	33.33 %	Non-Coding
110	NC_009511	AAAAAG	2	12	4397154	4397165	83.33 %	0 %	16.67 %	0 %	Non-Coding
111	NC_009511	CGCCCT	2	12	4463072	4463083	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
112	NC_009511	GCACCG	2	12	4689269	4689280	16.67 %	0 %	33.33 %	50 %	Non-Coding
113	NC_009511	CCCGTC	2	12	4756921	4756932	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
114	NC_009511	GCGGAA	2	12	4793872	4793883	33.33 %	0 %	50 %	16.67 %	Non-Coding
115	NC_009511	CGATCT	2	12	4821616	4821627	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
116	NC_009511	CGATCG	2	12	4836961	4836972	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
117	NC_009511	AAGTCA	2	12	4858513	4858524	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
118	NC_009511	ATCCCA	2	12	4894100	4894111	33.33 %	16.67 %	0 %	50 %	Non-Coding
119	NC_009511	CGCTGG	2	12	4905181	4905192	0 %	16.67 %	50 %	33.33 %	Non-Coding
120	NC_009511	GCTGAT	2	12	4919763	4919774	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
121	NC_009511	TTTTGA	2	12	4928667	4928678	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
122	NC_009511	GAAATG	2	12	4992068	4992079	50 %	16.67 %	33.33 %	0 %	Non-Coding
123	NC_009511	GGGCGC	2	12	5044685	5044696	0 %	0 %	66.67 %	33.33 %	Non-Coding
124	NC_009511	CGCTGG	2	12	5109406	5109417	0 %	16.67 %	50 %	33.33 %	Non-Coding
125	NC_009511	ACCGTC	2	12	5144650	5144661	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
126	NC_009511	CTTTGC	2	12	5184429	5184440	0 %	50 %	16.67 %	33.33 %	Non-Coding
127	NC_009511	GGCGGG	2	12	5190780	5190791	0 %	0 %	83.33 %	16.67 %	Non-Coding
128	NC_009511	GACGGC	2	12	5228522	5228533	16.67 %	0 %	50 %	33.33 %	Non-Coding
129	NC_009511	GACATC	2	12	5278156	5278167	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
130	NC_009511	GCACCC	2	12	5341677	5341688	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
131	NC_009511	CACCTA	2	12	5368083	5368094	33.33 %	16.67 %	0 %	50 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.