MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01

Total Repeats: 68

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009429	GCCGAG	2	12	19000	19011	16.67 %	0 %	50 %	33.33 %	Non-Coding
2	NC_009429	CTCCGG	2	12	72799	72810	0 %	16.67 %	33.33 %	50 %	Non-Coding
3	NC_009429	GCAGGT	2	12	119178	119189	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
4	NC_009429	GGCAAG	2	12	170942	170953	33.33 %	0 %	50 %	16.67 %	Non-Coding
5	NC_009429	CGGCCC	2	12	186869	186880	0 %	0 %	33.33 %	66.67 %	Non-Coding
6	NC_009429	CTCGGT	2	12	191389	191400	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
7	NC_009429	CGAGGC	2	12	191451	191462	16.67 %	0 %	50 %	33.33 %	Non-Coding
8	NC_009429	CTGCGG	2	12	197403	197414	0 %	16.67 %	50 %	33.33 %	Non-Coding
9	NC_009429	GCGGGA	2	12	262628	262639	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
10	NC_009429	CCAGCG	2	12	266062	266073	16.67 %	0 %	33.33 %	50 %	Non-Coding
11	NC_009429	CATGGG	2	12	269218	269229	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
12	NC_009429	GCCGCG	2	12	310333	310344	0 %	0 %	50 %	50 %	Non-Coding
13	NC_009429	CCCTGA	2	12	326590	326601	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
14	NC_009429	GCTCCC	2	12	327280	327291	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
15	NC_009429	TCCGCC	2	12	333262	333273	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
16	NC_009429	CCAGAT	2	12	366522	366533	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
17	NC_009429	GTCCCC	2	12	369639	369650	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
18	NC_009429	CGCCAG	2	12	378602	378613	16.67 %	0 %	33.33 %	50 %	Non-Coding
19	NC_009429	AGCGCC	2	12	378645	378656	16.67 %	0 %	33.33 %	50 %	Non-Coding
20	NC_009429	AACGAG	2	12	381468	381479	50 %	0 %	33.33 %	16.67 %	Non-Coding
21	NC_009429	TCGGGG	2	12	383594	383605	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
22	NC_009429	GCCGCG	2	12	383900	383911	0 %	0 %	50 %	50 %	Non-Coding
23	NC_009429	TTGCGG	2	12	384132	384143	0 %	33.33 %	50 %	16.67 %	Non-Coding
24	NC_009429	GTCACG	2	12	387112	387123	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
25	NC_009429	CAGCGC	2	12	392477	392488	16.67 %	0 %	33.33 %	50 %	Non-Coding
26	NC_009429	CCGCGC	2	12	394563	394574	0 %	0 %	33.33 %	66.67 %	Non-Coding
27	NC_009429	GCTCTG	2	12	397817	397828	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
28	NC_009429	GGAAAA	2	12	404375	404386	66.67 %	0 %	33.33 %	0 %	Non-Coding
29	NC_009429	GACCGG	2	12	426866	426877	16.67 %	0 %	50 %	33.33 %	Non-Coding
30	NC_009429	CGGCTG	2	12	426906	426917	0 %	16.67 %	50 %	33.33 %	Non-Coding
31	NC_009429	TCCGCC	2	12	434225	434236	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
32	NC_009429	GGCTAC	2	12	434355	434366	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
33	NC_009429	CGGGCA	2	12	434491	434502	16.67 %	0 %	50 %	33.33 %	Non-Coding
34	NC_009429	CCGCCA	2	12	435349	435360	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
35	NC_009429	CGTGAC	2	12	448786	448797	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
36	NC_009429	TCGATC	2	12	451078	451089	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
37	NC_009429	GGGGCC	2	12	456309	456320	0 %	0 %	66.67 %	33.33 %	Non-Coding
38	NC_009429	GGCCAC	2	12	462005	462016	16.67 %	0 %	33.33 %	50 %	Non-Coding
39	NC_009429	AGCCGT	2	12	471871	471882	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
40	NC_009429	GGCTCG	2	12	486871	486882	0 %	16.67 %	50 %	33.33 %	Non-Coding
41	NC_009429	CTCCAG	2	12	487719	487730	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
42	NC_009429	CGAGGG	2	12	496415	496426	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
43	NC_009429	CGGTCG	2	12	515122	515133	0 %	16.67 %	50 %	33.33 %	Non-Coding
44	NC_009429	CGCAGG	2	12	515832	515843	16.67 %	0 %	50 %	33.33 %	Non-Coding
45	NC_009429	CCATCA	2	12	543044	543055	33.33 %	16.67 %	0 %	50 %	Non-Coding
46	NC_009429	GGCCCG	2	12	550625	550636	0 %	0 %	50 %	50 %	Non-Coding
47	NC_009429	CCTCGG	2	12	559809	559820	0 %	16.67 %	33.33 %	50 %	Non-Coding
48	NC_009429	GACGAG	2	12	581499	581510	33.33 %	0 %	50 %	16.67 %	Non-Coding
49	NC_009429	GTTGCG	2	12	582706	582717	0 %	33.33 %	50 %	16.67 %	Non-Coding
50	NC_009429	TCGCGG	2	12	640674	640685	0 %	16.67 %	50 %	33.33 %	Non-Coding
51	NC_009429	GGAAAA	2	12	645275	645286	66.67 %	0 %	33.33 %	0 %	Non-Coding
52	NC_009429	CACCAG	2	12	653276	653287	33.33 %	0 %	16.67 %	50 %	Non-Coding
53	NC_009429	CCGCCA	2	12	673456	673467	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
54	NC_009429	CTGATC	2	12	680669	680680	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
55	NC_009429	CTTGCG	2	12	694428	694439	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
56	NC_009429	CAAAAG	2	12	695654	695665	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
57	NC_009429	AACGAG	2	12	697023	697034	50 %	0 %	33.33 %	16.67 %	Non-Coding
58	NC_009429	AAGCGG	2	12	713680	713691	33.33 %	0 %	50 %	16.67 %	Non-Coding
59	NC_009429	CGAGAG	2	12	716863	716874	33.33 %	0 %	50 %	16.67 %	Non-Coding
60	NC_009429	AACGAG	2	12	723821	723832	50 %	0 %	33.33 %	16.67 %	Non-Coding
61	NC_009429	TCCAGA	2	12	738568	738579	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
62	NC_009429	CTCGTT	2	12	747449	747460	0 %	50 %	16.67 %	33.33 %	Non-Coding
63	NC_009429	TAGTTG	2	12	790732	790743	16.67 %	50 %	33.33 %	0 %	Non-Coding
64	NC_009429	CCCCGA	2	12	800622	800633	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
65	NC_009429	CGAGCG	2	12	803115	803126	16.67 %	0 %	50 %	33.33 %	Non-Coding
66	NC_009429	CATCGT	2	12	803919	803930	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
67	NC_009429	CGCCTG	2	12	839526	839537	0 %	16.67 %	33.33 %	50 %	Non-Coding
68	NC_009429	CCCTGG	2	12	843183	843194	0 %	16.67 %	33.33 %	50 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.