MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Repeats of Shigella sonnei Ss046 plasmid pSS046_spB

Total Repeats: 56

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009346	ATG	2	6	41	46	33.33 %	33.33 %	33.33 %	0 %	145294032
2	NC_009346	GGT	3	9	106	114	0 %	33.33 %	66.67 %	0 %	145294032
3	NC_009346	GAA	2	6	186	191	66.67 %	0 %	33.33 %	0 %	145294032
4	NC_009346	AAT	2	6	352	357	66.67 %	33.33 %	0 %	0 %	145294032
5	NC_009346	AGA	2	6	402	407	66.67 %	0 %	33.33 %	0 %	145294032
6	NC_009346	AAG	2	6	419	424	66.67 %	0 %	33.33 %	0 %	145294032
7	NC_009346	AAC	2	6	458	463	66.67 %	0 %	0 %	33.33 %	145294032
8	NC_009346	GCA	2	6	541	546	33.33 %	0 %	33.33 %	33.33 %	145294032
9	NC_009346	TGC	3	9	591	599	0 %	33.33 %	33.33 %	33.33 %	145294032
10	NC_009346	GTC	2	6	797	802	0 %	33.33 %	33.33 %	33.33 %	145294032
11	NC_009346	CCA	2	6	815	820	33.33 %	0 %	0 %	66.67 %	145294032
12	NC_009346	TGA	2	6	840	845	33.33 %	33.33 %	33.33 %	0 %	145294032
13	NC_009346	GGA	2	6	849	854	33.33 %	0 %	66.67 %	0 %	145294032
14	NC_009346	TAA	3	9	942	950	66.67 %	33.33 %	0 %	0 %	145294032
15	NC_009346	CAG	2	6	959	964	33.33 %	0 %	33.33 %	33.33 %	145294032
16	NC_009346	ATG	2	6	977	982	33.33 %	33.33 %	33.33 %	0 %	145294032
17	NC_009346	GCT	2	6	1168	1173	0 %	33.33 %	33.33 %	33.33 %	145294032
18	NC_009346	ATG	2	6	1331	1336	33.33 %	33.33 %	33.33 %	0 %	145294032
19	NC_009346	AGA	2	6	1400	1405	66.67 %	0 %	33.33 %	0 %	145294032
20	NC_009346	TGT	3	9	1431	1439	0 %	66.67 %	33.33 %	0 %	145294032
21	NC_009346	ATT	2	6	1566	1571	33.33 %	66.67 %	0 %	0 %	145294032
22	NC_009346	ATT	2	6	1671	1676	33.33 %	66.67 %	0 %	0 %	145294033
23	NC_009346	ATA	2	6	1809	1814	66.67 %	33.33 %	0 %	0 %	145294033
24	NC_009346	GTT	2	6	1821	1826	0 %	66.67 %	33.33 %	0 %	145294033
25	NC_009346	GTA	2	6	1887	1892	33.33 %	33.33 %	33.33 %	0 %	145294033
26	NC_009346	CCT	2	6	1990	1995	0 %	33.33 %	0 %	66.67 %	145294034
27	NC_009346	CAT	2	6	2049	2054	33.33 %	33.33 %	0 %	33.33 %	145294034
28	NC_009346	CTT	2	6	2055	2060	0 %	66.67 %	0 %	33.33 %	145294034
29	NC_009346	TCT	2	6	2104	2109	0 %	66.67 %	0 %	33.33 %	Non-Coding
30	NC_009346	CTG	2	6	2136	2141	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
31	NC_009346	CAG	2	6	2227	2232	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
32	NC_009346	ACT	2	6	2280	2285	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
33	NC_009346	CAT	2	6	2313	2318	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
34	NC_009346	GCT	2	6	2344	2349	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
35	NC_009346	GCG	2	6	2705	2710	0 %	0 %	66.67 %	33.33 %	145294035
36	NC_009346	CTT	2	6	2715	2720	0 %	66.67 %	0 %	33.33 %	145294035
37	NC_009346	CGC	2	6	2816	2821	0 %	0 %	33.33 %	66.67 %	Non-Coding
38	NC_009346	TGT	2	6	2900	2905	0 %	66.67 %	33.33 %	0 %	Non-Coding
39	NC_009346	TTC	2	6	2985	2990	0 %	66.67 %	0 %	33.33 %	145294036
40	NC_009346	AGC	2	6	3058	3063	33.33 %	0 %	33.33 %	33.33 %	145294036
41	NC_009346	TGC	3	9	3109	3117	0 %	33.33 %	33.33 %	33.33 %	145294036
42	NC_009346	CCG	2	6	3199	3204	0 %	0 %	33.33 %	66.67 %	Non-Coding
43	NC_009346	AGA	3	9	3474	3482	66.67 %	0 %	33.33 %	0 %	145294037
44	NC_009346	GCT	2	6	3502	3507	0 %	33.33 %	33.33 %	33.33 %	145294037
45	NC_009346	GGC	2	6	3540	3545	0 %	0 %	66.67 %	33.33 %	145294037
46	NC_009346	AAG	2	6	3593	3598	66.67 %	0 %	33.33 %	0 %	145294037
47	NC_009346	GTG	2	6	3921	3926	0 %	33.33 %	66.67 %	0 %	Non-Coding
48	NC_009346	TGC	2	6	4040	4045	0 %	33.33 %	33.33 %	33.33 %	145294038
49	NC_009346	GTT	2	6	4121	4126	0 %	66.67 %	33.33 %	0 %	145294038
50	NC_009346	CAT	2	6	4200	4205	33.33 %	33.33 %	0 %	33.33 %	145294038
51	NC_009346	TCA	2	6	4252	4257	33.33 %	33.33 %	0 %	33.33 %	145294038
52	NC_009346	TGT	2	6	4282	4287	0 %	66.67 %	33.33 %	0 %	145294038
53	NC_009346	TTA	2	6	4415	4420	33.33 %	66.67 %	0 %	0 %	Non-Coding
54	NC_009346	CGT	2	6	4761	4766	0 %	33.33 %	33.33 %	33.33 %	145294039
55	NC_009346	GTG	2	6	4988	4993	0 %	33.33 %	66.67 %	0 %	Non-Coding
56	NC_009346	GCG	2	6	5060	5065	0 %	0 %	66.67 %	33.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.