MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Shigella sonnei Ss046 plasmid pSS046_spA

Total Repeats: 45

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009345	GCA	2	6	60	65	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
2	NC_009345	GCC	2	6	209	214	0 %	0 %	33.33 %	66.67 %	Non-Coding
3	NC_009345	CGC	2	6	285	290	0 %	0 %	33.33 %	66.67 %	Non-Coding
4	NC_009345	GCC	2	6	308	313	0 %	0 %	33.33 %	66.67 %	Non-Coding
5	NC_009345	GCT	2	6	378	383	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
6	NC_009345	TGT	2	6	418	423	0 %	66.67 %	33.33 %	0 %	Non-Coding
7	NC_009345	CTG	2	6	434	439	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
8	NC_009345	GCC	2	6	2568	2573	0 %	0 %	33.33 %	66.67 %	Non-Coding
9	NC_009345	ATG	2	6	2754	2759	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
10	NC_009345	TTA	2	6	2767	2772	33.33 %	66.67 %	0 %	0 %	Non-Coding
11	NC_009345	CAG	2	6	2777	2782	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12	NC_009345	TTC	2	6	2803	2808	0 %	66.67 %	0 %	33.33 %	Non-Coding
13	NC_009345	TGA	2	6	2840	2845	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
14	NC_009345	ACT	2	6	2874	2879	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
15	NC_009345	CCA	2	6	2890	2895	33.33 %	0 %	0 %	66.67 %	Non-Coding
16	NC_009345	ACC	3	9	2898	2906	33.33 %	0 %	0 %	66.67 %	Non-Coding
17	NC_009345	CAT	2	6	2945	2950	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
18	NC_009345	ACC	2	6	2982	2987	33.33 %	0 %	0 %	66.67 %	Non-Coding
19	NC_009345	TAC	2	6	3093	3098	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
20	NC_009345	CTG	2	6	3192	3197	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
21	NC_009345	AGG	2	6	3422	3427	33.33 %	0 %	66.67 %	0 %	Non-Coding
22	NC_009345	CAG	2	6	3481	3486	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
23	NC_009345	GCA	2	6	3501	3506	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
24	NC_009345	GAG	2	6	3568	3573	33.33 %	0 %	66.67 %	0 %	Non-Coding
25	NC_009345	AAC	2	6	3578	3583	66.67 %	0 %	0 %	33.33 %	Non-Coding
26	NC_009345	CAA	2	6	3769	3774	66.67 %	0 %	0 %	33.33 %	Non-Coding
27	NC_009345	ACC	2	6	3775	3780	33.33 %	0 %	0 %	66.67 %	Non-Coding
28	NC_009345	TTC	2	6	3895	3900	0 %	66.67 %	0 %	33.33 %	Non-Coding
29	NC_009345	ATG	2	6	4048	4053	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
30	NC_009345	GAA	2	6	4144	4149	66.67 %	0 %	33.33 %	0 %	Non-Coding
31	NC_009345	ATT	2	6	4242	4247	33.33 %	66.67 %	0 %	0 %	Non-Coding
32	NC_009345	GTT	2	6	4567	4572	0 %	66.67 %	33.33 %	0 %	Non-Coding
33	NC_009345	CAT	2	6	4573	4578	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
34	NC_009345	GTT	2	6	4616	4621	0 %	66.67 %	33.33 %	0 %	Non-Coding
35	NC_009345	GCA	2	6	4742	4747	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
36	NC_009345	CAG	2	6	4757	4762	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
37	NC_009345	GCG	2	6	4828	4833	0 %	0 %	66.67 %	33.33 %	Non-Coding
38	NC_009345	AGA	2	6	4898	4903	66.67 %	0 %	33.33 %	0 %	Non-Coding
39	NC_009345	GTG	2	6	4981	4986	0 %	33.33 %	66.67 %	0 %	Non-Coding
40	NC_009345	GCA	2	6	5255	5260	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
41	NC_009345	AAG	2	6	5482	5487	66.67 %	0 %	33.33 %	0 %	Non-Coding
42	NC_009345	GCA	2	6	5591	5596	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
43	NC_009345	CAT	3	9	5670	5678	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
44	NC_009345	ATT	4	12	5756	5767	33.33 %	66.67 %	0 %	0 %	Non-Coding
45	NC_009345	TCA	2	6	6630	6635	33.33 %	33.33 %	0 %	33.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.