MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Lawsonia intracellularis PHE/MN1-00 plasmid 1

Total Repeats: 81

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_008012	AAC	2	6	34	39	66.67 %	0 %	0 %	33.33 %	Non-Coding
2	NC_008012	GAA	2	6	167	172	66.67 %	0 %	33.33 %	0 %	Non-Coding
3	NC_008012	TAT	2	6	224	229	33.33 %	66.67 %	0 %	0 %	Non-Coding
4	NC_008012	TCA	2	6	235	240	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
5	NC_008012	TAT	2	6	1428	1433	33.33 %	66.67 %	0 %	0 %	Non-Coding
6	NC_008012	AGT	2	6	1502	1507	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
7	NC_008012	AAC	2	6	2274	2279	66.67 %	0 %	0 %	33.33 %	Non-Coding
8	NC_008012	AAG	2	6	2330	2335	66.67 %	0 %	33.33 %	0 %	Non-Coding
9	NC_008012	TCC	2	6	2500	2505	0 %	33.33 %	0 %	66.67 %	Non-Coding
10	NC_008012	AGA	2	6	2549	2554	66.67 %	0 %	33.33 %	0 %	Non-Coding
11	NC_008012	AGA	2	6	2903	2908	66.67 %	0 %	33.33 %	0 %	Non-Coding
12	NC_008012	TAT	2	6	3017	3022	33.33 %	66.67 %	0 %	0 %	Non-Coding
13	NC_008012	TGG	2	6	3081	3086	0 %	33.33 %	66.67 %	0 %	Non-Coding
14	NC_008012	TAA	2	6	3154	3159	66.67 %	33.33 %	0 %	0 %	Non-Coding
15	NC_008012	TTG	2	6	3184	3189	0 %	66.67 %	33.33 %	0 %	Non-Coding
16	NC_008012	ATA	2	6	3218	3223	66.67 %	33.33 %	0 %	0 %	Non-Coding
17	NC_008012	ACC	2	6	3272	3277	33.33 %	0 %	0 %	66.67 %	Non-Coding
18	NC_008012	AAG	2	6	5338	5343	66.67 %	0 %	33.33 %	0 %	Non-Coding
19	NC_008012	GAA	2	6	5347	5352	66.67 %	0 %	33.33 %	0 %	Non-Coding
20	NC_008012	TAT	2	6	5461	5466	33.33 %	66.67 %	0 %	0 %	Non-Coding
21	NC_008012	TTA	3	9	5508	5516	33.33 %	66.67 %	0 %	0 %	Non-Coding
22	NC_008012	TCA	2	6	5632	5637	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
23	NC_008012	CTA	2	6	5649	5654	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
24	NC_008012	TTC	2	6	5669	5674	0 %	66.67 %	0 %	33.33 %	Non-Coding
25	NC_008012	ATA	2	6	5697	5702	66.67 %	33.33 %	0 %	0 %	Non-Coding
26	NC_008012	CTT	2	6	5736	5741	0 %	66.67 %	0 %	33.33 %	Non-Coding
27	NC_008012	ATT	2	6	5743	5748	33.33 %	66.67 %	0 %	0 %	Non-Coding
28	NC_008012	AAT	2	6	5756	5761	66.67 %	33.33 %	0 %	0 %	Non-Coding
29	NC_008012	ATA	2	6	6576	6581	66.67 %	33.33 %	0 %	0 %	Non-Coding
30	NC_008012	TAA	2	6	6618	6623	66.67 %	33.33 %	0 %	0 %	Non-Coding
31	NC_008012	ATA	3	9	6647	6655	66.67 %	33.33 %	0 %	0 %	Non-Coding
32	NC_008012	TAA	2	6	6658	6663	66.67 %	33.33 %	0 %	0 %	Non-Coding
33	NC_008012	ATA	2	6	6713	6718	66.67 %	33.33 %	0 %	0 %	Non-Coding
34	NC_008012	TAG	2	6	6760	6765	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
35	NC_008012	TAA	2	6	6809	6814	66.67 %	33.33 %	0 %	0 %	Non-Coding
36	NC_008012	ATT	2	6	7248	7253	33.33 %	66.67 %	0 %	0 %	Non-Coding
37	NC_008012	TAA	2	6	10681	10686	66.67 %	33.33 %	0 %	0 %	Non-Coding
38	NC_008012	GCT	2	6	10860	10865	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
39	NC_008012	TTA	2	6	11369	11374	33.33 %	66.67 %	0 %	0 %	Non-Coding
40	NC_008012	AGG	2	6	12092	12097	33.33 %	0 %	66.67 %	0 %	Non-Coding
41	NC_008012	TAT	2	6	12098	12103	33.33 %	66.67 %	0 %	0 %	Non-Coding
42	NC_008012	TAT	2	6	12943	12948	33.33 %	66.67 %	0 %	0 %	Non-Coding
43	NC_008012	ATT	2	6	12958	12963	33.33 %	66.67 %	0 %	0 %	Non-Coding
44	NC_008012	AGC	2	6	13052	13057	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
45	NC_008012	AAT	2	6	15128	15133	66.67 %	33.33 %	0 %	0 %	Non-Coding
46	NC_008012	ACT	2	6	15147	15152	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
47	NC_008012	TTA	2	6	15181	15186	33.33 %	66.67 %	0 %	0 %	Non-Coding
48	NC_008012	TAA	2	6	15187	15192	66.67 %	33.33 %	0 %	0 %	Non-Coding
49	NC_008012	TAT	2	6	15269	15274	33.33 %	66.67 %	0 %	0 %	Non-Coding
50	NC_008012	AAG	2	6	15277	15282	66.67 %	0 %	33.33 %	0 %	Non-Coding
51	NC_008012	CTT	2	6	18894	18899	0 %	66.67 %	0 %	33.33 %	Non-Coding
52	NC_008012	TAT	2	6	18902	18907	33.33 %	66.67 %	0 %	0 %	Non-Coding
53	NC_008012	TAA	2	6	19793	19798	66.67 %	33.33 %	0 %	0 %	Non-Coding
54	NC_008012	CAC	2	6	19805	19810	33.33 %	0 %	0 %	66.67 %	Non-Coding
55	NC_008012	TCT	2	6	19837	19842	0 %	66.67 %	0 %	33.33 %	Non-Coding
56	NC_008012	TCA	2	6	19849	19854	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
57	NC_008012	ACA	2	6	19855	19860	66.67 %	0 %	0 %	33.33 %	Non-Coding
58	NC_008012	ATA	2	6	19929	19934	66.67 %	33.33 %	0 %	0 %	Non-Coding
59	NC_008012	TAC	2	6	21088	21093	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
60	NC_008012	AAT	2	6	21094	21099	66.67 %	33.33 %	0 %	0 %	Non-Coding
61	NC_008012	ATA	2	6	21124	21129	66.67 %	33.33 %	0 %	0 %	Non-Coding
62	NC_008012	AAT	2	6	21132	21137	66.67 %	33.33 %	0 %	0 %	Non-Coding
63	NC_008012	ATG	2	6	21978	21983	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
64	NC_008012	ATT	2	6	22602	22607	33.33 %	66.67 %	0 %	0 %	Non-Coding
65	NC_008012	TAA	2	6	22762	22767	66.67 %	33.33 %	0 %	0 %	Non-Coding
66	NC_008012	GTG	2	6	22789	22794	0 %	33.33 %	66.67 %	0 %	Non-Coding
67	NC_008012	TTA	2	6	22827	22832	33.33 %	66.67 %	0 %	0 %	Non-Coding
68	NC_008012	TAA	2	6	23012	23017	66.67 %	33.33 %	0 %	0 %	Non-Coding
69	NC_008012	TAA	2	6	23030	23035	66.67 %	33.33 %	0 %	0 %	Non-Coding
70	NC_008012	TAA	2	6	23061	23066	66.67 %	33.33 %	0 %	0 %	Non-Coding
71	NC_008012	TGT	2	6	24180	24185	0 %	66.67 %	33.33 %	0 %	Non-Coding
72	NC_008012	ACA	2	6	24285	24290	66.67 %	0 %	0 %	33.33 %	Non-Coding
73	NC_008012	TAA	2	6	25783	25788	66.67 %	33.33 %	0 %	0 %	Non-Coding
74	NC_008012	ATA	12	36	25791	25826	66.67 %	33.33 %	0 %	0 %	Non-Coding
75	NC_008012	ATT	2	6	25899	25904	33.33 %	66.67 %	0 %	0 %	Non-Coding
76	NC_008012	TAA	2	6	25917	25922	66.67 %	33.33 %	0 %	0 %	Non-Coding
77	NC_008012	ATT	2	6	26770	26775	33.33 %	66.67 %	0 %	0 %	Non-Coding
78	NC_008012	ATA	2	6	26796	26801	66.67 %	33.33 %	0 %	0 %	Non-Coding
79	NC_008012	ATA	2	6	26807	26812	66.67 %	33.33 %	0 %	0 %	Non-Coding
80	NC_008012	ATA	3	9	26847	26855	66.67 %	33.33 %	0 %	0 %	Non-Coding
81	NC_008012	ATA	2	6	26901	26906	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.