MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Thermus thermophilus HB8 chromosome

Total Repeats: 85

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_006461	GAGGCG	2	12	9878	9889	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
2	NC_006461	CGTCCG	2	12	10245	10256	0 %	16.67 %	33.33 %	50 %	Non-Coding
3	NC_006461	CCGATG	2	12	10485	10496	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
4	NC_006461	AGCCAA	2	12	32093	32104	50 %	0 %	16.67 %	33.33 %	Non-Coding
5	NC_006461	GCGGGC	2	12	57940	57951	0 %	0 %	66.67 %	33.33 %	Non-Coding
6	NC_006461	CCTTCT	2	12	83635	83646	0 %	50 %	0 %	50 %	Non-Coding
7	NC_006461	GGGGGC	2	12	121402	121413	0 %	0 %	83.33 %	16.67 %	Non-Coding
8	NC_006461	ACCGGA	2	12	228725	228736	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
9	NC_006461	AGAAGG	2	12	228757	228768	50 %	0 %	50 %	0 %	Non-Coding
10	NC_006461	CCTTCG	2	12	290956	290967	0 %	33.33 %	16.67 %	50 %	Non-Coding
11	NC_006461	CGGTGG	2	12	294646	294657	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
12	NC_006461	GTGGGG	2	12	294759	294770	0 %	16.67 %	83.33 %	0 %	Non-Coding
13	NC_006461	CCTGGG	2	12	295322	295333	0 %	16.67 %	50 %	33.33 %	Non-Coding
14	NC_006461	CATCGG	2	12	350774	350785	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
15	NC_006461	CGGACG	2	12	351014	351025	16.67 %	0 %	50 %	33.33 %	Non-Coding
16	NC_006461	CGCCTC	2	12	351381	351392	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
17	NC_006461	CCCTCG	2	12	358623	358634	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
18	NC_006461	ACCCTG	2	12	359495	359506	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
19	NC_006461	CCGGGA	2	12	371503	371514	16.67 %	0 %	50 %	33.33 %	Non-Coding
20	NC_006461	AGGTCC	2	12	415091	415102	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
21	NC_006461	GGGCGA	2	12	415170	415181	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
22	NC_006461	CAGGGC	2	12	415237	415248	16.67 %	0 %	50 %	33.33 %	Non-Coding
23	NC_006461	CCCGTG	2	12	415256	415267	0 %	16.67 %	33.33 %	50 %	Non-Coding
24	NC_006461	CCGCCC	2	12	418018	418029	0 %	0 %	16.67 %	83.33 %	Non-Coding
25	NC_006461	ACGCCC	2	12	492635	492646	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
26	NC_006461	GCCCCC	2	12	547007	547018	0 %	0 %	16.67 %	83.33 %	Non-Coding
27	NC_006461	AGGGCC	2	12	548446	548457	16.67 %	0 %	50 %	33.33 %	Non-Coding
28	NC_006461	GACCCG	2	12	573062	573073	16.67 %	0 %	33.33 %	50 %	Non-Coding
29	NC_006461	CGCGGG	2	12	574088	574099	0 %	0 %	66.67 %	33.33 %	Non-Coding
30	NC_006461	CTAACG	2	12	614895	614906	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
31	NC_006461	CCTCGC	2	12	625679	625690	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
32	NC_006461	TGAGGG	2	12	627852	627863	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
33	NC_006461	CGGGCG	2	12	640018	640029	0 %	0 %	66.67 %	33.33 %	Non-Coding
34	NC_006461	CGAAGG	2	12	650076	650087	33.33 %	0 %	50 %	16.67 %	Non-Coding
35	NC_006461	GGAAGA	2	12	650373	650384	50 %	0 %	50 %	0 %	Non-Coding
36	NC_006461	GCCCAG	2	12	650442	650453	16.67 %	0 %	33.33 %	50 %	Non-Coding
37	NC_006461	AGGGCC	2	12	650581	650592	16.67 %	0 %	50 %	33.33 %	Non-Coding
38	NC_006461	CCTGGC	2	12	744033	744044	0 %	16.67 %	33.33 %	50 %	Non-Coding
39	NC_006461	ACGCCT	2	12	826888	826899	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
40	NC_006461	GCCTGG	2	12	828193	828204	0 %	16.67 %	50 %	33.33 %	Non-Coding
41	NC_006461	GGCCAG	2	12	829892	829903	16.67 %	0 %	50 %	33.33 %	Non-Coding
42	NC_006461	GGGCCT	2	12	830393	830404	0 %	16.67 %	50 %	33.33 %	Non-Coding
43	NC_006461	CAGGCC	2	12	830556	830567	16.67 %	0 %	33.33 %	50 %	Non-Coding
44	NC_006461	GGCCCG	2	12	830631	830642	0 %	0 %	50 %	50 %	Non-Coding
45	NC_006461	AGGGGG	2	12	909723	909734	16.67 %	0 %	83.33 %	0 %	Non-Coding
46	NC_006461	CCCCGC	2	12	931227	931238	0 %	0 %	16.67 %	83.33 %	Non-Coding
47	NC_006461	AGGGCG	2	12	947208	947219	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
48	NC_006461	CGAGGA	2	12	947242	947253	33.33 %	0 %	50 %	16.67 %	Non-Coding
49	NC_006461	GTCCAG	2	12	947866	947877	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
50	NC_006461	ACCTCC	2	12	947888	947899	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
51	NC_006461	GCGCGT	2	12	973609	973620	0 %	16.67 %	50 %	33.33 %	Non-Coding
52	NC_006461	ACGCGC	2	12	973777	973788	16.67 %	0 %	33.33 %	50 %	Non-Coding
53	NC_006461	GCCACC	2	12	975141	975152	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
54	NC_006461	CGGGCG	2	12	1013993	1014004	0 %	0 %	66.67 %	33.33 %	Non-Coding
55	NC_006461	TGGCGG	2	12	1031157	1031168	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
56	NC_006461	AGCCTA	2	12	1059220	1059231	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
57	NC_006461	CCTGGC	2	12	1097341	1097352	0 %	16.67 %	33.33 %	50 %	Non-Coding
58	NC_006461	AAGGGC	2	12	1101917	1101928	33.33 %	0 %	50 %	16.67 %	Non-Coding
59	NC_006461	TCCTAG	2	12	1166153	1166164	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
60	NC_006461	AAGCCA	2	12	1174205	1174216	50 %	0 %	16.67 %	33.33 %	Non-Coding
61	NC_006461	GTCACG	2	12	1233087	1233098	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
62	NC_006461	GAGGAC	2	12	1233326	1233337	33.33 %	0 %	50 %	16.67 %	Non-Coding
63	NC_006461	AAAAGG	2	12	1233726	1233737	66.67 %	0 %	33.33 %	0 %	Non-Coding
64	NC_006461	AGCCCT	2	12	1256017	1256028	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
65	NC_006461	CGCCCT	2	12	1274224	1274235	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
66	NC_006461	GATGAA	2	12	1312012	1312023	50 %	16.67 %	33.33 %	0 %	Non-Coding
67	NC_006461	CCCCTT	2	12	1351744	1351755	0 %	33.33 %	0 %	66.67 %	Non-Coding
68	NC_006461	GGCGTG	2	12	1467601	1467612	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
69	NC_006461	CGGCCT	2	12	1467810	1467821	0 %	16.67 %	33.33 %	50 %	Non-Coding
70	NC_006461	CGGGGG	2	12	1468037	1468048	0 %	0 %	83.33 %	16.67 %	Non-Coding
71	NC_006461	CTCTCC	2	12	1578709	1578720	0 %	33.33 %	0 %	66.67 %	Non-Coding
72	NC_006461	CCACCC	2	12	1633021	1633032	16.67 %	0 %	0 %	83.33 %	Non-Coding
73	NC_006461	ACCTCC	2	12	1647481	1647492	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
74	NC_006461	CTTCGC	2	12	1654415	1654426	0 %	33.33 %	16.67 %	50 %	Non-Coding
75	NC_006461	GCGCCC	2	12	1659016	1659027	0 %	0 %	33.33 %	66.67 %	Non-Coding
76	NC_006461	CCTCCA	2	12	1754337	1754348	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
77	NC_006461	CAAGGC	2	12	1754924	1754935	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
78	NC_006461	GCCCCG	2	12	1760006	1760017	0 %	0 %	33.33 %	66.67 %	Non-Coding
79	NC_006461	CGTAGA	2	12	1799667	1799678	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
80	NC_006461	CACCGC	2	12	1799707	1799718	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
81	NC_006461	CCTCGT	2	12	1799796	1799807	0 %	33.33 %	16.67 %	50 %	Non-Coding
82	NC_006461	AGGCCC	2	12	1800353	1800364	16.67 %	0 %	33.33 %	50 %	Non-Coding
83	NC_006461	CCCTGG	2	12	1802479	1802490	0 %	16.67 %	33.33 %	50 %	Non-Coding
84	NC_006461	CCGCGG	2	12	1810669	1810680	0 %	0 %	50 %	50 %	Non-Coding
85	NC_006461	CGCCCC	2	12	1841780	1841791	0 %	0 %	16.67 %	83.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.