MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A

Total Repeats: 150

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_004633	CTA	2	6	1	6	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
2	NC_004633	CGA	2	6	34	39	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
3	NC_004633	CGG	2	6	81	86	0 %	0 %	66.67 %	33.33 %	Non-Coding
4	NC_004633	GCT	2	6	249	254	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
5	NC_004633	TGC	2	6	1711	1716	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
6	NC_004633	CAA	2	6	2334	2339	66.67 %	0 %	0 %	33.33 %	Non-Coding
7	NC_004633	CAG	2	6	2448	2453	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
8	NC_004633	ATT	2	6	3554	3559	33.33 %	66.67 %	0 %	0 %	Non-Coding
9	NC_004633	AAC	2	6	6585	6590	66.67 %	0 %	0 %	33.33 %	Non-Coding
10	NC_004633	ATG	2	6	6614	6619	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
11	NC_004633	TGA	2	6	6733	6738	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
12	NC_004633	CAT	2	6	6740	6745	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
13	NC_004633	CTG	2	6	6760	6765	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
14	NC_004633	TGC	2	6	7000	7005	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
15	NC_004633	TGC	2	6	7114	7119	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
16	NC_004633	GCC	2	6	7199	7204	0 %	0 %	33.33 %	66.67 %	Non-Coding
17	NC_004633	TGC	2	6	7218	7223	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
18	NC_004633	AGG	2	6	7267	7272	33.33 %	0 %	66.67 %	0 %	Non-Coding
19	NC_004633	ATG	2	6	7287	7292	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
20	NC_004633	TGA	2	6	7438	7443	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
21	NC_004633	TGC	2	6	7510	7515	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
22	NC_004633	ACG	2	6	7707	7712	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
23	NC_004633	CGT	2	6	9161	9166	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
24	NC_004633	ATC	2	6	9242	9247	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
25	NC_004633	ATT	2	6	9258	9263	33.33 %	66.67 %	0 %	0 %	Non-Coding
26	NC_004633	GTG	2	6	9277	9282	0 %	33.33 %	66.67 %	0 %	Non-Coding
27	NC_004633	CTA	2	6	9283	9288	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
28	NC_004633	GGT	2	6	9329	9334	0 %	33.33 %	66.67 %	0 %	Non-Coding
29	NC_004633	CTA	2	6	10497	10502	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
30	NC_004633	TAA	2	6	10537	10542	66.67 %	33.33 %	0 %	0 %	Non-Coding
31	NC_004633	ATT	3	9	10566	10574	33.33 %	66.67 %	0 %	0 %	Non-Coding
32	NC_004633	TGA	2	6	10638	10643	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
33	NC_004633	TGC	2	6	10668	10673	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
34	NC_004633	AGC	2	6	10712	10717	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
35	NC_004633	GAT	2	6	10987	10992	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
36	NC_004633	ATC	2	6	11047	11052	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
37	NC_004633	GGA	2	6	11102	11107	33.33 %	0 %	66.67 %	0 %	Non-Coding
38	NC_004633	CAT	2	6	11141	11146	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
39	NC_004633	ATT	2	6	11159	11164	33.33 %	66.67 %	0 %	0 %	Non-Coding
40	NC_004633	TCC	2	6	14235	14240	0 %	33.33 %	0 %	66.67 %	Non-Coding
41	NC_004633	TCA	2	6	16093	16098	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
42	NC_004633	GTC	2	6	16109	16114	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
43	NC_004633	ACG	2	6	16255	16260	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
44	NC_004633	GCC	2	6	17369	17374	0 %	0 %	33.33 %	66.67 %	Non-Coding
45	NC_004633	CTT	2	6	17475	17480	0 %	66.67 %	0 %	33.33 %	Non-Coding
46	NC_004633	TTG	2	6	17492	17497	0 %	66.67 %	33.33 %	0 %	Non-Coding
47	NC_004633	CAA	2	6	17511	17516	66.67 %	0 %	0 %	33.33 %	Non-Coding
48	NC_004633	AGG	2	6	17617	17622	33.33 %	0 %	66.67 %	0 %	Non-Coding
49	NC_004633	AAG	2	6	18620	18625	66.67 %	0 %	33.33 %	0 %	Non-Coding
50	NC_004633	CCG	2	6	18887	18892	0 %	0 %	33.33 %	66.67 %	Non-Coding
51	NC_004633	CTG	2	6	18905	18910	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
52	NC_004633	GTT	2	6	19033	19038	0 %	66.67 %	33.33 %	0 %	Non-Coding
53	NC_004633	GCA	2	6	19067	19072	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
54	NC_004633	TGC	2	6	19080	19085	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
55	NC_004633	AAC	2	6	19090	19095	66.67 %	0 %	0 %	33.33 %	Non-Coding
56	NC_004633	GAA	2	6	19189	19194	66.67 %	0 %	33.33 %	0 %	Non-Coding
57	NC_004633	TAA	2	6	19240	19245	66.67 %	33.33 %	0 %	0 %	Non-Coding
58	NC_004633	ACA	2	6	19421	19426	66.67 %	0 %	0 %	33.33 %	Non-Coding
59	NC_004633	CGT	2	6	19454	19459	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
60	NC_004633	ACC	2	6	19548	19553	33.33 %	0 %	0 %	66.67 %	Non-Coding
61	NC_004633	TGG	2	6	19595	19600	0 %	33.33 %	66.67 %	0 %	Non-Coding
62	NC_004633	CCA	2	6	19680	19685	33.33 %	0 %	0 %	66.67 %	Non-Coding
63	NC_004633	AGG	2	6	20152	20157	33.33 %	0 %	66.67 %	0 %	Non-Coding
64	NC_004633	TCT	2	6	20184	20189	0 %	66.67 %	0 %	33.33 %	Non-Coding
65	NC_004633	CTG	2	6	20234	20239	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
66	NC_004633	CAG	2	6	20259	20264	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
67	NC_004633	GCC	2	6	22680	22685	0 %	0 %	33.33 %	66.67 %	Non-Coding
68	NC_004633	ATT	2	6	22837	22842	33.33 %	66.67 %	0 %	0 %	Non-Coding
69	NC_004633	CAA	2	6	23064	23069	66.67 %	0 %	0 %	33.33 %	Non-Coding
70	NC_004633	TTG	2	6	23078	23083	0 %	66.67 %	33.33 %	0 %	Non-Coding
71	NC_004633	ACA	2	6	24035	24040	66.67 %	0 %	0 %	33.33 %	Non-Coding
72	NC_004633	GGA	2	6	26401	26406	33.33 %	0 %	66.67 %	0 %	Non-Coding
73	NC_004633	ATG	2	6	26968	26973	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
74	NC_004633	GTC	2	6	27018	27023	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
75	NC_004633	CCA	2	6	27195	27200	33.33 %	0 %	0 %	66.67 %	Non-Coding
76	NC_004633	GGC	2	6	27229	27234	0 %	0 %	66.67 %	33.33 %	Non-Coding
77	NC_004633	ATT	2	6	29717	29722	33.33 %	66.67 %	0 %	0 %	Non-Coding
78	NC_004633	CAA	2	6	29773	29778	66.67 %	0 %	0 %	33.33 %	Non-Coding
79	NC_004633	TGC	2	6	29787	29792	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
80	NC_004633	CGT	2	6	29825	29830	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
81	NC_004633	AGC	2	6	29849	29854	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
82	NC_004633	AGC	2	6	29912	29917	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
83	NC_004633	GCT	2	6	30043	30048	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
84	NC_004633	GTC	2	6	30160	30165	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
85	NC_004633	TGC	2	6	30959	30964	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
86	NC_004633	TTG	2	6	30993	30998	0 %	66.67 %	33.33 %	0 %	Non-Coding
87	NC_004633	GCA	2	6	31117	31122	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
88	NC_004633	TCT	2	6	31127	31132	0 %	66.67 %	0 %	33.33 %	Non-Coding
89	NC_004633	CGC	2	6	31182	31187	0 %	0 %	33.33 %	66.67 %	Non-Coding
90	NC_004633	AGC	2	6	31203	31208	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
91	NC_004633	GCC	2	6	31273	31278	0 %	0 %	33.33 %	66.67 %	Non-Coding
92	NC_004633	GTT	2	6	31618	31623	0 %	66.67 %	33.33 %	0 %	Non-Coding
93	NC_004633	GAA	2	6	32860	32865	66.67 %	0 %	33.33 %	0 %	Non-Coding
94	NC_004633	TTC	2	6	32884	32889	0 %	66.67 %	0 %	33.33 %	Non-Coding
95	NC_004633	GCA	2	6	34232	34237	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
96	NC_004633	GCT	2	6	34243	34248	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
97	NC_004633	TGC	2	6	36854	36859	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
98	NC_004633	TCA	2	6	36860	36865	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
99	NC_004633	ACG	2	6	36996	37001	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
100	NC_004633	GAT	2	6	37057	37062	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
101	NC_004633	CGC	2	6	37181	37186	0 %	0 %	33.33 %	66.67 %	Non-Coding
102	NC_004633	CCT	2	6	37211	37216	0 %	33.33 %	0 %	66.67 %	Non-Coding
103	NC_004633	ACA	2	6	37353	37358	66.67 %	0 %	0 %	33.33 %	Non-Coding
104	NC_004633	TCG	2	6	37364	37369	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
105	NC_004633	TTA	2	6	37396	37401	33.33 %	66.67 %	0 %	0 %	Non-Coding
106	NC_004633	ACA	2	6	37415	37420	66.67 %	0 %	0 %	33.33 %	Non-Coding
107	NC_004633	ATT	2	6	39412	39417	33.33 %	66.67 %	0 %	0 %	Non-Coding
108	NC_004633	AAT	2	6	41405	41410	66.67 %	33.33 %	0 %	0 %	Non-Coding
109	NC_004633	TCT	2	6	41496	41501	0 %	66.67 %	0 %	33.33 %	Non-Coding
110	NC_004633	CTG	2	6	41515	41520	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
111	NC_004633	TCA	2	6	41556	41561	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
112	NC_004633	ACC	2	6	42277	42282	33.33 %	0 %	0 %	66.67 %	Non-Coding
113	NC_004633	CAA	2	6	42327	42332	66.67 %	0 %	0 %	33.33 %	Non-Coding
114	NC_004633	CAG	3	9	42363	42371	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
115	NC_004633	TGA	2	6	42444	42449	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
116	NC_004633	GAG	2	6	42468	42473	33.33 %	0 %	66.67 %	0 %	Non-Coding
117	NC_004633	CCT	2	6	45967	45972	0 %	33.33 %	0 %	66.67 %	Non-Coding
118	NC_004633	GCG	2	6	46062	46067	0 %	0 %	66.67 %	33.33 %	Non-Coding
119	NC_004633	GCA	2	6	46145	46150	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
120	NC_004633	TCG	2	6	46194	46199	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
121	NC_004633	AGC	2	6	46221	46226	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
122	NC_004633	GTG	2	6	47069	47074	0 %	33.33 %	66.67 %	0 %	Non-Coding
123	NC_004633	ACT	2	6	47077	47082	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
124	NC_004633	CAG	2	6	47113	47118	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
125	NC_004633	TGC	2	6	47119	47124	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
126	NC_004633	CAA	2	6	47274	47279	66.67 %	0 %	0 %	33.33 %	Non-Coding
127	NC_004633	GCA	2	6	47354	47359	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
128	NC_004633	GAA	2	6	47725	47730	66.67 %	0 %	33.33 %	0 %	Non-Coding
129	NC_004633	CCA	2	6	47769	47774	33.33 %	0 %	0 %	66.67 %	Non-Coding
130	NC_004633	AGG	2	6	47799	47804	33.33 %	0 %	66.67 %	0 %	Non-Coding
131	NC_004633	CCT	2	6	53114	53119	0 %	33.33 %	0 %	66.67 %	Non-Coding
132	NC_004633	CAG	2	6	55555	55560	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
133	NC_004633	CGA	2	6	55573	55578	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
134	NC_004633	TTA	2	6	56853	56858	33.33 %	66.67 %	0 %	0 %	Non-Coding
135	NC_004633	CCT	2	6	57278	57283	0 %	33.33 %	0 %	66.67 %	Non-Coding
136	NC_004633	CCT	2	6	57774	57779	0 %	33.33 %	0 %	66.67 %	Non-Coding
137	NC_004633	GCG	2	6	57881	57886	0 %	0 %	66.67 %	33.33 %	Non-Coding
138	NC_004633	ATG	2	6	66027	66032	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
139	NC_004633	TCA	2	6	66044	66049	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
140	NC_004633	GCC	2	6	66100	66105	0 %	0 %	33.33 %	66.67 %	Non-Coding
141	NC_004633	TGA	2	6	66161	66166	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
142	NC_004633	ATT	2	6	66172	66177	33.33 %	66.67 %	0 %	0 %	Non-Coding
143	NC_004633	CGC	2	6	68224	68229	0 %	0 %	33.33 %	66.67 %	Non-Coding
144	NC_004633	TCT	2	6	68276	68281	0 %	66.67 %	0 %	33.33 %	Non-Coding
145	NC_004633	ACA	2	6	73380	73385	66.67 %	0 %	0 %	33.33 %	Non-Coding
146	NC_004633	ACC	2	6	73393	73398	33.33 %	0 %	0 %	66.67 %	Non-Coding
147	NC_004633	ACG	2	6	73417	73422	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
148	NC_004633	CTG	2	6	73446	73451	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
149	NC_004633	CTG	2	6	73519	73524	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
150	NC_004633	GGT	2	6	73589	73594	0 %	33.33 %	66.67 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.