MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydophila abortus S26/3

Total Repeats: 55

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_004552	TCTCAA	2	12	77458	77469	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
2	NC_004552	AGAAAA	2	12	162902	162913	83.33 %	0 %	16.67 %	0 %	Non-Coding
3	NC_004552	TTTTAT	2	12	164388	164399	16.67 %	83.33 %	0 %	0 %	Non-Coding
4	NC_004552	AAAGCG	2	12	179390	179401	50 %	0 %	33.33 %	16.67 %	Non-Coding
5	NC_004552	TATGAA	2	12	198312	198323	50 %	33.33 %	16.67 %	0 %	Non-Coding
6	NC_004552	TTTTTA	2	12	210298	210309	16.67 %	83.33 %	0 %	0 %	Non-Coding
7	NC_004552	CCTTAA	2	12	229039	229050	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
8	NC_004552	AATTAT	2	12	239474	239485	50 %	50 %	0 %	0 %	Non-Coding
9	NC_004552	TTGAAT	2	12	243787	243798	33.33 %	50 %	16.67 %	0 %	Non-Coding
10	NC_004552	ATATAA	2	12	261536	261547	66.67 %	33.33 %	0 %	0 %	Non-Coding
11	NC_004552	GGGAAA	2	12	267498	267509	50 %	0 %	50 %	0 %	Non-Coding
12	NC_004552	TAAGAA	2	12	277424	277435	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
13	NC_004552	AGCAAT	2	12	309402	309413	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
14	NC_004552	AACATT	2	12	311613	311624	50 %	33.33 %	0 %	16.67 %	Non-Coding
15	NC_004552	GCAATC	2	12	312235	312246	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
16	NC_004552	TTCCGG	2	12	312516	312527	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
17	NC_004552	TTGGTA	2	12	312829	312840	16.67 %	50 %	33.33 %	0 %	Non-Coding
18	NC_004552	TTCTGT	2	12	313026	313037	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
19	NC_004552	CCTTGA	2	12	321031	321042	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
20	NC_004552	TCTATG	2	12	373680	373691	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
21	NC_004552	AATTTA	2	12	374517	374528	50 %	50 %	0 %	0 %	Non-Coding
22	NC_004552	TTTTAT	2	12	395389	395400	16.67 %	83.33 %	0 %	0 %	Non-Coding
23	NC_004552	TAAAAT	2	12	432045	432056	66.67 %	33.33 %	0 %	0 %	Non-Coding
24	NC_004552	TGGATG	2	12	435460	435471	16.67 %	33.33 %	50 %	0 %	Non-Coding
25	NC_004552	AAAAAT	2	12	464513	464524	83.33 %	16.67 %	0 %	0 %	Non-Coding
26	NC_004552	ATTTTT	2	12	471153	471164	16.67 %	83.33 %	0 %	0 %	Non-Coding
27	NC_004552	TATAAT	2	12	483868	483879	50 %	50 %	0 %	0 %	Non-Coding
28	NC_004552	AAGCTA	2	12	620426	620437	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
29	NC_004552	TACAGA	2	12	622641	622652	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
30	NC_004552	CATGAA	2	12	629093	629104	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
31	NC_004552	TTTAAT	2	12	633246	633257	33.33 %	66.67 %	0 %	0 %	Non-Coding
32	NC_004552	TTAGGG	2	12	638157	638168	16.67 %	33.33 %	50 %	0 %	Non-Coding
33	NC_004552	AAGGGA	2	12	678886	678897	50 %	0 %	50 %	0 %	Non-Coding
34	NC_004552	ATTAAT	2	12	681529	681540	50 %	50 %	0 %	0 %	Non-Coding
35	NC_004552	TTAGTG	2	12	683686	683697	16.67 %	50 %	33.33 %	0 %	Non-Coding
36	NC_004552	AAAGAC	2	12	685171	685182	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
37	NC_004552	TAAAAG	2	12	712065	712076	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
38	NC_004552	ATTTTA	2	12	724754	724765	33.33 %	66.67 %	0 %	0 %	Non-Coding
39	NC_004552	TATTCT	2	12	732748	732759	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
40	NC_004552	GAAAAA	2	12	732762	732773	83.33 %	0 %	16.67 %	0 %	Non-Coding
41	NC_004552	AGAATA	2	12	776483	776494	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
42	NC_004552	TAAAAT	2	12	827025	827036	66.67 %	33.33 %	0 %	0 %	Non-Coding
43	NC_004552	TTCTAA	2	12	889266	889277	33.33 %	50 %	0 %	16.67 %	Non-Coding
44	NC_004552	TCTTTC	2	12	889299	889310	0 %	66.67 %	0 %	33.33 %	Non-Coding
45	NC_004552	ATTTTA	2	12	923634	923645	33.33 %	66.67 %	0 %	0 %	Non-Coding
46	NC_004552	ATCTAT	2	12	938915	938926	33.33 %	50 %	0 %	16.67 %	Non-Coding
47	NC_004552	ATAAAA	2	12	955364	955375	83.33 %	16.67 %	0 %	0 %	Non-Coding
48	NC_004552	TCGCTT	2	12	994325	994336	0 %	50 %	16.67 %	33.33 %	Non-Coding
49	NC_004552	TTATCC	2	12	995227	995238	16.67 %	50 %	0 %	33.33 %	Non-Coding
50	NC_004552	AAATTT	2	12	997379	997390	50 %	50 %	0 %	0 %	Non-Coding
51	NC_004552	AAATAG	2	12	1050241	1050252	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
52	NC_004552	TAATTT	2	12	1075673	1075684	33.33 %	66.67 %	0 %	0 %	Non-Coding
53	NC_004552	TACAGA	2	12	1126858	1126869	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
54	NC_004552	TCTCCT	2	12	1128147	1128158	0 %	50 %	0 %	50 %	Non-Coding
55	NC_004552	GTTAAA	2	12	1139769	1139780	50 %	33.33 %	16.67 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.