MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydophila caviae GPIC chromosome

Total Repeats: 52

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_003361	TGTTTT	2	12	6637	6648	0 %	83.33 %	16.67 %	0 %	Non-Coding
2	NC_003361	TCTTCA	2	12	32934	32945	16.67 %	50 %	0 %	33.33 %	Non-Coding
3	NC_003361	TGTTTT	2	12	37690	37701	0 %	83.33 %	16.67 %	0 %	Non-Coding
4	NC_003361	TTTTTA	2	12	39205	39216	16.67 %	83.33 %	0 %	0 %	Non-Coding
5	NC_003361	GAAGCC	2	12	64378	64389	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
6	NC_003361	CGCTCT	2	12	77395	77406	0 %	33.33 %	16.67 %	50 %	Non-Coding
7	NC_003361	TTTTAA	2	12	77559	77570	33.33 %	66.67 %	0 %	0 %	Non-Coding
8	NC_003361	AAATAA	2	12	80250	80261	83.33 %	16.67 %	0 %	0 %	Non-Coding
9	NC_003361	AATTAA	2	12	93634	93645	66.67 %	33.33 %	0 %	0 %	Non-Coding
10	NC_003361	GCAATA	2	12	184742	184753	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
11	NC_003361	ATTTTT	2	12	225721	225732	16.67 %	83.33 %	0 %	0 %	Non-Coding
12	NC_003361	TTAATT	2	12	273879	273890	33.33 %	66.67 %	0 %	0 %	Non-Coding
13	NC_003361	TCATTA	2	12	290673	290684	33.33 %	50 %	0 %	16.67 %	Non-Coding
14	NC_003361	TAAAAT	2	12	290765	290776	66.67 %	33.33 %	0 %	0 %	Non-Coding
15	NC_003361	ATTAGA	2	12	339839	339850	50 %	33.33 %	16.67 %	0 %	Non-Coding
16	NC_003361	AAGACA	2	12	455654	455665	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
17	NC_003361	TAAAAT	2	12	466171	466182	66.67 %	33.33 %	0 %	0 %	Non-Coding
18	NC_003361	AAAAAT	2	12	470978	470989	83.33 %	16.67 %	0 %	0 %	Non-Coding
19	NC_003361	TTTCTA	2	12	477623	477634	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
20	NC_003361	TTAAAA	2	12	508765	508776	66.67 %	33.33 %	0 %	0 %	Non-Coding
21	NC_003361	TAACTA	2	12	543642	543653	50 %	33.33 %	0 %	16.67 %	Non-Coding
22	NC_003361	TTGAAA	2	12	560088	560099	50 %	33.33 %	16.67 %	0 %	Non-Coding
23	NC_003361	TTTTTA	2	12	594211	594222	16.67 %	83.33 %	0 %	0 %	Non-Coding
24	NC_003361	TAATTT	2	12	607029	607040	33.33 %	66.67 %	0 %	0 %	Non-Coding
25	NC_003361	TAAAAA	2	12	631796	631807	83.33 %	16.67 %	0 %	0 %	Non-Coding
26	NC_003361	TAAAAG	2	12	645104	645115	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
27	NC_003361	TGAATT	2	12	661386	661397	33.33 %	50 %	16.67 %	0 %	Non-Coding
28	NC_003361	GAAAAA	2	12	674078	674089	83.33 %	0 %	16.67 %	0 %	Non-Coding
29	NC_003361	GATAAA	2	12	741954	741965	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
30	NC_003361	TATTCT	2	12	762541	762552	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
31	NC_003361	AATTAA	2	12	792843	792854	66.67 %	33.33 %	0 %	0 %	Non-Coding
32	NC_003361	AGGTAT	2	12	817991	818002	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
33	NC_003361	GAAAAT	2	12	818999	819010	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
34	NC_003361	TTCTTA	2	12	838529	838540	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
35	NC_003361	AATTAA	2	12	917179	917190	66.67 %	33.33 %	0 %	0 %	Non-Coding
36	NC_003361	GAAAAT	2	12	918397	918408	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
37	NC_003361	CCCCTA	2	12	919955	919966	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
38	NC_003361	ATAAAA	2	12	981947	981958	83.33 %	16.67 %	0 %	0 %	Non-Coding
39	NC_003361	GGTAAA	2	12	1017154	1017165	50 %	16.67 %	33.33 %	0 %	Non-Coding
40	NC_003361	TTTCTC	2	12	1017352	1017363	0 %	66.67 %	0 %	33.33 %	Non-Coding
41	NC_003361	ATCATA	2	12	1019934	1019945	50 %	33.33 %	0 %	16.67 %	Non-Coding
42	NC_003361	CAAAAA	2	12	1020417	1020428	83.33 %	0 %	0 %	16.67 %	Non-Coding
43	NC_003361	TCGCTT	2	12	1023059	1023070	0 %	50 %	16.67 %	33.33 %	Non-Coding
44	NC_003361	ATCCTT	2	12	1023965	1023976	16.67 %	50 %	0 %	33.33 %	Non-Coding
45	NC_003361	TTAAAA	2	12	1033001	1033012	66.67 %	33.33 %	0 %	0 %	Non-Coding
46	NC_003361	TAAAAC	2	12	1057853	1057864	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
47	NC_003361	TATATG	2	12	1066054	1066065	33.33 %	50 %	16.67 %	0 %	Non-Coding
48	NC_003361	TATAAC	2	12	1087136	1087147	50 %	33.33 %	0 %	16.67 %	Non-Coding
49	NC_003361	TCTTTC	2	12	1089140	1089151	0 %	66.67 %	0 %	33.33 %	Non-Coding
50	NC_003361	ATCCTC	2	12	1096244	1096255	16.67 %	33.33 %	0 %	50 %	Non-Coding
51	NC_003361	TAATTT	2	12	1104455	1104466	33.33 %	66.67 %	0 %	0 %	Non-Coding
52	NC_003361	AAAAAC	2	12	1173193	1173204	83.33 %	0 %	0 %	16.67 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.